Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328B02f
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   124   3e-29
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z48045-1|CAA88103.2|  630|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  124 bits (300), Expect = 3e-29
 Identities = 67/118 (56%), Positives = 78/118 (66%)
 Frame = -3

Query: 446 PIFLGXEHYKXARGVQXILQXYKXXRGXLLLIFGYGRVV*RRTS*QWHXARKIQXFLSQP 267
           P  +G  HY  ARGVQ ILQ YK  +  ++ I G   +           ARKIQ FLSQP
Sbjct: 419 PNVVGQNHYDIARGVQKILQDYKSLQD-IIAILGMDELS-EEDKLTVSRARKIQRFLSQP 476

Query: 266 FQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAK 93
           FQVAEVFTGH GK V LEETI+GF+ IL G+ DHLPEVAFYM G I++V  KA+ LAK
Sbjct: 477 FQVAEVFTGHQGKFVSLEETIRGFTMILKGELDHLPEVAFYMQGGIDDVFKKAEELAK 534


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 22/65 (33%), Positives = 29/65 (44%)
 Frame = -2

Query: 450  TPNIFGX*ALQXCTGSSXNSSGLQVPAGTIIAYFWVWTSCLKKDKLTVAXCT*NSXVPLT 271
            TP+  G    Q  T S  NSSG  V  G+  A      S  K    +++    +S +P T
Sbjct: 1302 TPSTIGSTVTQPSTVSGSNSSGSTVTIGSSEAS--TSGSSFKTSPSSISPVPTSSPIPST 1359

Query: 270  TFPSS 256
            TF SS
Sbjct: 1360 TFASS 1364


>Z48045-1|CAA88103.2|  630|Caenorhabditis elegans Hypothetical
           protein C41C4.3 protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 248 FTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAF 147
           F   + KL+ L       S I AG +DH  E+ F
Sbjct: 361 FLSKSSKLISLTLQCNSISSIAAGAFDHFTELQF 394


>AL110487-6|CAB54433.2|  472|Caenorhabditis elegans Hypothetical
           protein Y39E4B.7 protein.
          Length = 472

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 1   RVFFFFFCNN*IYLKYKYFL 60
           R FFFF C+  I++ Y +FL
Sbjct: 146 RYFFFFLCSLSIHMMYVFFL 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,922,637
Number of Sequences: 27780
Number of extensions: 177726
Number of successful extensions: 339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)