Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328A11f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 181 5e-47
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 73 3e-14
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 53 2e-08
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 52 5e-08
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 44 1e-05
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 44 2e-05
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 40 2e-04
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 40 2e-04
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 38 0.001
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 37 0.002
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 33 0.034
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 31 0.079
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 31 0.14
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 29 0.42
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 28 0.73
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 28 0.73
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 27 1.3
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 1.7
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 3.9
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 25 5.2
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.8
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 25 6.8
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.0
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 25 9.0
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 181 bits (441), Expect = 5e-47
Identities = 93/192 (48%), Positives = 122/192 (63%), Gaps = 19/192 (9%)
Frame = +1
Query: 1 RVKEDVLKELPPKITQDYYCELSPLQRCLYEDFS-----RDHVPQDITSTSH-------- 141
R+KEDVL +LPPKI QDYYC++S LQR L DF + + D T +
Sbjct: 1593 RLKEDVLADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINEELEDDETEKTQGTRKKKSQ 1652
Query: 142 -THVFQALHYLQNVCNHPKLVLTPDHPEAQTIAKQLRAQNSNLDDIEHSAKLPALKQLLL 318
H+FQAL Y++ +CNHP L+LT HP+ I KQL +NS L D++H+ KL AL QLL
Sbjct: 1653 KAHIFQALQYMRKLCNHPALILTEKHPKRNAIVKQLAKENSGLHDLKHAPKLTALGQLLR 1712
Query: 319 DCGIG-----ATGAEAESSPVVSQHRALVFCQLKKMLDIVERDLLLQHLPSVTYLRLDGS 483
DCG+G + G ++ + VS+HR L+FCQLK MLD+VE+DLL +P VTY+RLDGS
Sbjct: 1713 DCGLGNSSVNSNGIDSALTNAVSEHRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGS 1772
Query: 484 VPPQHRHAIVTR 519
V P R VT+
Sbjct: 1773 VEPTKRQEAVTK 1784
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 72.9 bits (171), Expect = 3e-14
Identities = 58/171 (33%), Positives = 85/171 (49%)
Frame = +1
Query: 1 RVKEDVLKELPPKITQDYYCELSPLQRCLYEDFSRDHVPQDITSTSHTHVFQALHYLQNV 180
R+K DV +LP K Q +C+L+PLQR Y+DF + Q I + ++ + L+ +
Sbjct: 540 RMKLDVAADLPKKSEQVLFCKLTPLQRKAYQDFLQGSDMQKILNGKRQMLY-GIDILRKI 598
Query: 181 CNHPKLVLTPDHPEAQTIAKQLRAQNSNLDDIEHSAKLPALKQLLLDCGIGATGAEAESS 360
CNHP LV T L ++ N D E S KL ++ LL T + +
Sbjct: 599 CNHPDLV---------TREYLLHKEDYNYGDPEKSGKLKVIRALL-------TLWKKQG- 641
Query: 361 PVVSQHRALVFCQLKKMLDIVERDLLLQHLPSVTYLRLDGSVPPQHRHAIV 513
HR L+F Q ++MLDI+E + L+ LP V Y R+DGS R +V
Sbjct: 642 -----HRTLLFSQTRQMLDILE--IGLKDLPDVHYCRMDGSTSIALRQDLV 685
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 53.2 bits (122), Expect = 2e-08
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 1 RVKEDVLKELPPKITQDYYCELSPLQRCLYEDF-SRDHVPQDITSTSHTHVFQALHYLQN 177
R+K +V K++P K YC+LS QR LY+DF +R + + S + + L L+
Sbjct: 679 RLKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFINRARTREILASGNFMSIINCLMQLRK 738
Query: 178 VCNHPKL 198
VCNHP L
Sbjct: 739 VCNHPNL 745
Score = 41.5 bits (93), Expect = 7e-05
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Frame = +1
Query: 181 CNHPKLVLTPDHPE--AQTIAKQLRAQNSNLDDIEHSAK------LPALKQLLLDCGIGA 336
C PK V+ D PE +TI + L + S + H A P + L DCG
Sbjct: 936 CITPKAVVV-DLPELFCKTIPRDLLYEVSRKINPLHQASTRLAIAFPDKRLLQYDCGKLQ 994
Query: 337 TGAEAESSPVVSQHRALVFCQLKKMLDIVERDLLLQHLPSVTYLRLDGSVPPQHRHAIVT 516
V + HR L+F Q+ K+LDI+E+ L ++ YLRLDG+ + R +
Sbjct: 995 VLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFL---NIHGHRYLRLDGATKIEQRQILTE 1051
Query: 517 R 519
R
Sbjct: 1052 R 1052
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 52.0 bits (119), Expect = 5e-08
Identities = 54/174 (31%), Positives = 79/174 (45%), Gaps = 3/174 (1%)
Frame = +1
Query: 1 RVKEDVLKELPPKITQDYYCELSPLQRCLYEDF-SRDH--VPQDITSTSHTHVFQALHYL 171
R+K+DV K LP K + ELS LQ Y++ +R++ + Q I+S S + + L
Sbjct: 592 RLKKDVEKSLPSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISSGSQISLLNIVVEL 651
Query: 172 QNVCNHPKLVLTPDHPEAQTIAKQLRAQNSNLDDIEHSAKLPALKQLLLDCGIGATGAEA 351
+ NHP L + Q I Q R I +S K+ L +LL
Sbjct: 652 KKASNHPYLFDGVEESWMQKINSQGRRDEVLKGLIMNSGKMVLLDKLL------------ 699
Query: 352 ESSPVVSQHRALVFCQLKKMLDIVERDLLLQHLPSVTYLRLDGSVPPQHRHAIV 513
S HR L+F Q+ +MLDI+ L L+ P + RLDG+VP R +
Sbjct: 700 -SRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYP---HQRLDGTVPAAVRRTSI 749
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 44.4 bits (100), Expect = 1e-05
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Frame = +1
Query: 1 RVKEDVLKELPPKITQDYYCELSPLQRCLYEDFSRDHVPQDITSTSHTHVFQALHYLQNV 180
R + + K LP K +C LS Q LY+ F I + + +A+ L+ +
Sbjct: 509 RTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLKKI 568
Query: 181 CNHPKLV-LTPDHPEAQT------IAKQLRAQNSNLDDIEHSAKLPALKQLL 315
CNHP L+ LT D + I ++LR ++ N+D S K+ L+++L
Sbjct: 569 CNHPDLLNLTEDLEGCEALFPPGFIPRELRGRDRNIDS-SLSGKMLVLERML 619
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 43.6 bits (98), Expect = 2e-05
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 4/177 (2%)
Frame = +1
Query: 1 RVKEDVLKELPPKITQDYYCELSPLQRCLYEDFSRD---HVPQDITSTSHTHVFQALHYL 171
R+K+DV KELP K+ + C LS LQ LY+ + V + T + + L
Sbjct: 1096 RLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGKTGIKGLQNTVMQL 1155
Query: 172 QNVCNHPKLVLTPDHPEAQTIAKQLRAQNSNLDDIEHSA-KLPALKQLLLDCGIGATGAE 348
+ +CNHP + + + + + +N+D + +A K L ++L + TG
Sbjct: 1156 KKICNHPFIF--------EDVERAIDPSGTNVDLLWRAAGKFELLDRILPK--LFLTG-- 1203
Query: 349 AESSPVVSQHRALVFCQLKKMLDIVERDLLLQHLPSVTYLRLDGSVPPQHRHAIVTR 519
H+ L+F Q+ +++ I+E D L + YLRLDGS R +++ +
Sbjct: 1204 ---------HKTLMFFQMTQIMTIME-DYL--RSKNWKYLRLDGSTKSDDRCSLLAQ 1248
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 40.3 bits (90), Expect = 2e-04
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 3/174 (1%)
Frame = +1
Query: 1 RVKEDVLKELPPKITQDYYCELSPLQRCLYEDFSRDHVPQDITSTSHTHVFQALHY---L 171
R+K+DV K LP K + ELS +Q Y++ + T L+ L
Sbjct: 608 RLKKDVEKSLPSKSERILRVELSDMQTEWYKNILTKNYRALTGHTDGRGQLSLLNIVVEL 667
Query: 172 QNVCNHPKLVLTPDHPEAQTIAKQLRAQNSNLDDIEHSAKLPALKQLLLDCGIGATGAEA 351
+ V NHP L P E + +++ +++ I +S K+ L +LL + G
Sbjct: 668 KKVSNHPYLF--PGAAEKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQR--LKHDG--- 720
Query: 352 ESSPVVSQHRALVFCQLKKMLDIVERDLLLQHLPSVTYLRLDGSVPPQHRHAIV 513
HR L+F Q+ +ML+I+ + L+ Y RLDG++P R +
Sbjct: 721 --------HRVLIFSQMVRMLNILGEYMSLR---GYNYQRLDGTIPASVRRVSI 763
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 39.9 bits (89), Expect = 2e-04
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 5/176 (2%)
Frame = +1
Query: 1 RVKEDVLKELPPKITQDYYCELSPLQRCLYEDFSRDHV--PQDIT--STSHTHVFQALHY 168
R+K+DV ELP K+ + C++S LQ+ LY + + +D T + +
Sbjct: 644 RLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKTGIKGLQNTVMQ 703
Query: 169 LQNVCNHPKLVLTPDHPEAQTIAKQLRAQNSNLDDI-EHSAKLPALKQLLLDCGIGATGA 345
L+ +CNHP + + + + + N D + S K L ++L
Sbjct: 704 LKKICNHPFVF--------EDVERSIDPTGFNYDMLWRVSGKFELLDRIL---------- 745
Query: 346 EAESSPVVSQHRALVFCQLKKMLDIVERDLLLQHLPSVTYLRLDGSVPPQHRHAIV 513
S HR L+F Q+ ++++I+E D L H YLRLDGS R ++
Sbjct: 746 ---PKLFRSGHRILMFFQMTQIMNIME-DYL--HYRQWRYLRLDGSTKADDRSKLL 795
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Frame = +1
Query: 1 RVKEDVLKELPPKITQDYYCELSPLQRCLYEDFSR-----DHVPQDITSTSHT--HVFQA 159
RVK++V EL KI ++ YC+L+ Q+ LY+ R + + + I T +
Sbjct: 1071 RVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGGDDTVASIMNL 1130
Query: 160 LHYLQNVCNHPKL 198
+ + VCNHP L
Sbjct: 1131 VMQFRKVCNHPDL 1143
Score = 36.7 bits (81), Expect = 0.002
Identities = 21/78 (26%), Positives = 40/78 (51%)
Frame = +1
Query: 283 SAKLPALKQLLLDCGIGATGAEAESSPVVSQHRALVFCQLKKMLDIVERDLLLQHLPSVT 462
+ ++P++ + + D G + + + HR L++ Q+ +M+D++E L +
Sbjct: 1415 NVRIPSMLRFIADSGKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFR---QYK 1471
Query: 463 YLRLDGSVPPQHRHAIVT 516
YLRLDGS R +VT
Sbjct: 1472 YLRLDGSSKISQRRDMVT 1489
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 37.1 bits (82), Expect = 0.002
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Frame = +1
Query: 1 RVKEDVLKELPPKITQDYYCELSPLQRCLY---------EDFSRDHVPQDITSTS-HTHV 150
R KE+VL +LPPKI YC + Q LY + +R+++ + + H +
Sbjct: 639 RRKENVLSDLPPKIQHVEYCHMEETQLSLYLSVLELKNLVNANRENILMQLRKAALHQLL 698
Query: 151 FQALHYLQNVCNHPKLVLTPD---HPEAQTIAKQLRAQNSNLDDIEHSAKLPALKQLLLD 321
F++ + L+ + K +L D Q I + + S+ + + + + L L
Sbjct: 699 FRSQYNLETLSLMSKRILREDAYLDANPQYIFEDMEVM-SDFELHKLADQYRHLHPFALK 757
Query: 322 CGIGATGAEAES-----SPVVSQHRALVFCQLKKMLDIVERDLLLQHLPSVTYLRLDGSV 486
A+ + R L+F Q ++LDI+E +L L + +LRLDGS
Sbjct: 758 GKPWMDSAKVKKLCSLLKKSRPNERILIFSQFTQVLDILE--YVLNTL-DLEFLRLDGST 814
Query: 487 PPQHRHAIV 513
P + R ++
Sbjct: 815 PVETRQQLI 823
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 32.7 bits (71), Expect = 0.034
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 379 RALVFCQLKKMLDIVERDLLLQHLPSVTYLRLDGSVPPQHRHAIV 513
R L+F Q +MLDI+E+ +L L ++Y+RLDGS + R I+
Sbjct: 942 RILLFSQFTQMLDILEQ--VLDTL-KISYVRLDGSTQVEVRQDII 983
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 31.5 bits (68), Expect = 0.079
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = -1
Query: 293 SLAECSMSSRLEFCALNCLAMVCASGWSGVNTSFG 189
S A+C+ ++R+E+CA+N ++C SG++ S G
Sbjct: 685 SCADCNTTARVEWCAINFPVVLCID-CSGIHRSLG 718
>SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 30.7 bits (66), Expect = 0.14
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Frame = +1
Query: 4 VKEDVLKELP-PKITQDYYCELSPLQRCLYEDFSRDHVPQDITST--SHTHVFQAL-HYL 171
V + L LP P I Y EL ++ E+ + V + + + +H VF+ L +L
Sbjct: 851 VLKTYLHRLPEPVIPGTQYEELLEAEKIEKEEEKIERVVEVMKTLHPAHLSVFRFLIAHL 910
Query: 172 QNVCNHPKLVLTPDHPEAQTIAKQLRAQNSNLDDIEHSAKLPALKQLLLD 321
VC H + L + A L N D++H+ K Q +LD
Sbjct: 911 GRVCKHAEKNLMNSKNVSTVFAPTLMRDKVNRFDLQHATKKSTALQFMLD 960
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 29.1 bits (62), Expect = 0.42
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 4/175 (2%)
Frame = +1
Query: 1 RVKEDVLKELPPKITQDYYCELSPLQRCLYEDFSRDHVP--QDITSTSHTHVF--QALHY 168
RVK +VL P K+ ++P+Q+ LY+ ++ ++IT ++T Q
Sbjct: 771 RVKSEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNITGYANTSSSGGQRTTS 830
Query: 169 LQNVCNHPKLVLTPDHPEAQTIAKQLRAQNSNLDDIEHSAKLPALKQLLLDCGIGATGAE 348
L N+ + L HP + + +N + S + + K L+L +
Sbjct: 831 LNNILMQLRKTLA--HP--YIYSPDIEDRNLPYELAMRSLEEASCKFLILRLLVPKL--- 883
Query: 349 AESSPVVSQHRALVFCQLKKMLDIVERDLLLQHLPSVTYLRLDGSVPPQHRHAIV 513
+ HR L+F Q + LDI+E D ++ Y R DG+ R + +
Sbjct: 884 -----ITRGHRILLFSQFIQQLDILE-DWF--EYKNIAYARFDGASSEMERQSAI 930
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 28.3 bits (60), Expect = 0.73
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = +1
Query: 10 EDVLKELPPKITQDYYCELSPLQRCLYED 96
E VLK PP I D Y L PL RC + D
Sbjct: 305 ECVLKYRPPFIQHDTYGRLKPL-RCFFND 332
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 1 RVKEDVLKELPPKITQDYYCELSPLQRCLYEDFS 102
R K VL LP K +CE S +R Y+DF+
Sbjct: 614 RKKSQVLDALPKKTRIIEFCEFSEEERRRYDDFA 647
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/44 (25%), Positives = 18/44 (40%)
Frame = -1
Query: 395 QNTSARCCDTTGEDSASAPVAPIPQSRSSCFKAGSLAECSMSSR 264
Q + C T G P +P P+ + C+K G + + R
Sbjct: 56 QEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCR 99
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = +1
Query: 28 LPPKITQ---DYYCELSP-LQRCLYEDFSRD---HVPQDITSTSHTHVFQALHYLQNVCN 186
LPP++ + D + E + + LY D R ++ + + ++ ++FQ + ++ + +
Sbjct: 629 LPPRVVEVRKDLFNEEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQMAD 688
Query: 187 HPKLVL 204
HP LVL
Sbjct: 689 HPDLVL 694
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +1
Query: 85 LYEDFSR-DHVPQDITSTSHTHVF---QALHYLQNVCNHPKLVLTPDHPEAQTIAKQLR 249
L+ FS D++ +D T T T Q H + C VLT PEA+T+ +Q R
Sbjct: 704 LFTKFSNFDYLFEDRTVTFLTDFIIRKQKAHLSADQCKQLANVLTQASPEAKTVLEQHR 762
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 319 DCGIGATGAEA--ESSPVVSQHRALVFCQLKKMLDIVERDL 435
DCG G A+ E QH+ L+F +K DI++R L
Sbjct: 113 DCGRGEVLADLIEEWYTTTKQHKPLLFLVGEKHRDIIQRKL 153
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 238 KQLRAQNSNLDDIEHSAKLPALKQLLL 318
K +R Q + DD+ S+ LP L LLL
Sbjct: 629 KYIRVQRYSDDDLSESSLLPRLVNLLL 655
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +1
Query: 40 ITQDYYCELSPLQRCLYEDFSRDHVPQDITSTS 138
I +DYY E +Q+C+ + +++ + +++ TS
Sbjct: 156 IRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTS 188
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 214 HPEAQTIAKQLRAQNSNLDDIEHS 285
H E + +A + + SN+DD+E S
Sbjct: 232 HSEGKELAGESEEEGSNVDDVEDS 255
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 438 QQISLDDVQHFFQLTEYERSVLRHDRRGL 352
Q I+ D++ + Q T Y +VLR D R L
Sbjct: 11 QPINFDNLPLYLQGTNYGENVLRSDPRWL 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,274
Number of Sequences: 5004
Number of extensions: 36976
Number of successful extensions: 153
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -