Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328A09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0578 + 18671625-18671813,18672199-18672219 29 2.3
09_04_0577 + 18668502-18668690,18669090-18669254 29 2.3
01_04_0101 + 16023442-16023516,16023534-16023647,16024044-16024208 28 4.0
08_02_1392 + 26702622-26702900,26703173-26703214,26703483-267035... 28 5.2
04_03_1021 + 21771284-21771472,21771872-21772036 27 6.9
02_04_0070 + 19453060-19453134,19453152-19453265,19453664-19453828 27 6.9
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325... 27 9.1
05_04_0036 + 17386160-17386318,17386588-17386651,17387089-173871... 27 9.1
05_03_0223 - 10561997-10562575 27 9.1
05_03_0221 - 10553405-10553983 27 9.1
04_03_0134 - 11677268-11677993 27 9.1
>09_04_0578 + 18671625-18671813,18672199-18672219
Length = 69
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 306 QLIDAFALGHFY*TQLHTCILLCNLLYRSTP 398
QL+D F G Q+ T I++ NL+YR P
Sbjct: 11 QLLDDFGCGEIQPNQIGTIIVIDNLVYRDHP 41
>09_04_0577 + 18668502-18668690,18669090-18669254
Length = 117
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 306 QLIDAFALGHFY*TQLHTCILLCNLLYRSTP 398
QL+D F G Q+ T I++ NL+YR P
Sbjct: 11 QLLDDFGCGEIQPNQIGTIIVIDNLVYRDHP 41
>01_04_0101 + 16023442-16023516,16023534-16023647,16024044-16024208
Length = 117
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 300 VPQLIDAFALGHFY*TQLHTCILLCNLLYRSTP 398
+ +L+D F G Q+ T I++ NL+YR P
Sbjct: 9 INKLLDDFGFGEIQPVQIGTIIVIDNLVYRDHP 41
>08_02_1392 +
26702622-26702900,26703173-26703214,26703483-26703593,
26703670-26703999
Length = 253
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 192 GVKDAKLIVMNLASHRVSTTDGSHEG-VLDVVGVDKHVPQLIDAFALGH 335
G+KD I+ L V T DGSH+ + + V P + A GH
Sbjct: 125 GIKDLWKIISILEKDGVETVDGSHKARISGITHVPLDFPVICKEIAEGH 173
>04_03_1021 + 21771284-21771472,21771872-21772036
Length = 117
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 306 QLIDAFALGHFY*TQLHTCILLCNLLYRSTP 398
+L+D F G Q+ T I++ NL+YR P
Sbjct: 11 KLLDDFGCGEIQPNQIGTIIVIDNLVYRDHP 41
>02_04_0070 + 19453060-19453134,19453152-19453265,19453664-19453828
Length = 117
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 306 QLIDAFALGHFY*TQLHTCILLCNLLYRSTP 398
+L+D F G Q+ T I++ NL+YR P
Sbjct: 11 KLLDDFGCGEIQPVQIGTIIVIDNLVYRDHP 41
>06_01_0456 -
3249662-3249710,3249838-3250451,3250694-3250780,
3251509-3252384,3252445-3252534,3252645-3252696,
3253117-3253168,3253265-3253363,3253444-3253528,
3253620-3253668,3253749-3253816,3254417-3254482,
3255690-3255741,3256685-3256767,3256915-3256946,
3257271-3257466,3258542-3258607,3259797-3259869,
3260010-3260224
Length = 967
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 171 GALARGNDRRGSSPATAEARTVLPDPGRRG 82
G +RGN+ RG++ +T+ + LP G G
Sbjct: 541 GGASRGNNERGNATSTSGQNSSLPSTGGLG 570
>05_04_0036 +
17386160-17386318,17386588-17386651,17387089-17387147,
17387268-17387343,17387521-17387592,17387786-17387873,
17387992-17388250,17388446-17388561,17388876-17389096,
17389196-17389224,17389285-17389420,17389567-17389651,
17389735-17389963
Length = 530
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 413 RSHRFISRYYN*YLKTNNVYKLDGNSMSENF 505
R R +R+Y+ +LK N V K+D S+S F
Sbjct: 496 RQPRRSARWYSDFLKNNAVIKVDDGSVSTAF 526
>05_03_0223 - 10561997-10562575
Length = 192
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 138 SSPATAEARTVLPDPGRRGPFGP 70
S P+ + RT P G GP+GP
Sbjct: 153 SPPSRVDVRTAYPPLGTTGPYGP 175
>05_03_0221 - 10553405-10553983
Length = 192
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 138 SSPATAEARTVLPDPGRRGPFGP 70
S P+ + RT P G GP+GP
Sbjct: 153 SPPSRVDVRTAYPPLGTTGPYGP 175
>04_03_0134 - 11677268-11677993
Length = 241
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 138 SSPATAEARTVLPDPGRRGPFGP 70
S P+ + RT P G GP+GP
Sbjct: 202 SPPSRVDVRTAYPPLGTTGPYGP 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,751,034
Number of Sequences: 37544
Number of extensions: 216094
Number of successful extensions: 656
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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