Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328A09f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF488691-1|AAN45858.1| 1004|Homo sapiens friend of GATA-1 protein.     29   7.5  
J03161-1|AAA36647.1|  508|Homo sapiens protein ( Human serum res...    29   9.9  
BC052572-1|AAH52572.1|  508|Homo sapiens serum response factor (...    29   9.9  
BC048211-1|AAH48211.1|  508|Homo sapiens serum response factor (...    29   9.9  
BC024187-1|AAH24187.1|  779|Homo sapiens DEAH (Asp-Glu-Ala-His) ...    29   9.9  
AL355385-5|CAI13785.1|  508|Homo sapiens serum response factor (...    29   9.9  
AL133375-5|CAI20207.1|  508|Homo sapiens serum response factor (...    29   9.9  
AF461690-1|AAN77932.1|  779|Homo sapiens DEAD-box containing hel...    29   9.9  

>AF488691-1|AAN45858.1| 1004|Homo sapiens friend of GATA-1 protein.
          Length = 1004

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 171 GALARGNDRRGSSPATAEARTVLPDPGRRGP---FGPAP 64
           G  AR    RG SPA A A +  P PG RGP    GP P
Sbjct: 887 GVEARTPADRGPSPAPAPAAS--PQPGSRGPRDGLGPEP 923


>J03161-1|AAA36647.1|  508|Homo sapiens protein ( Human serum
           response factor (SRF) mRNA, complete cds. ).
          Length = 508

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 177 YRKTSGVKDAKLIVMNLASHRVSTTDGSHEGVLDVVGV 290
           Y  TSG+ D  L V+N  S   ST   SH  V +  GV
Sbjct: 417 YAPTSGLGDGSLTVLNAFSQAPSTMQVSHSQVQEPGGV 454


>BC052572-1|AAH52572.1|  508|Homo sapiens serum response factor
           (c-fos serum response element-binding transcription
           facto protein.
          Length = 508

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 177 YRKTSGVKDAKLIVMNLASHRVSTTDGSHEGVLDVVGV 290
           Y  TSG+ D  L V+N  S   ST   SH  V +  GV
Sbjct: 417 YAPTSGLGDGSLTVLNAFSQAPSTMQVSHSQVQEPGGV 454


>BC048211-1|AAH48211.1|  508|Homo sapiens serum response factor
           (c-fos serum response element-binding transcription
           facto protein.
          Length = 508

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 177 YRKTSGVKDAKLIVMNLASHRVSTTDGSHEGVLDVVGV 290
           Y  TSG+ D  L V+N  S   ST   SH  V +  GV
Sbjct: 417 YAPTSGLGDGSLTVLNAFSQAPSTMQVSHSQVQEPGGV 454


>BC024187-1|AAH24187.1|  779|Homo sapiens DEAH (Asp-Glu-Ala-His) box
           polypeptide 40 protein.
          Length = 779

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 113 RASAVAGEEPRRSLPRASAPTLQEDQRRQGC*IDRDELG 229
           R  AVAG  PRR      +  LQE++    C  DR+E G
Sbjct: 3   RFPAVAGRAPRRQEEGERSRDLQEERLSAVCIADREEKG 41


>AL355385-5|CAI13785.1|  508|Homo sapiens serum response factor
           (c-fos serum response element-binding transcription
           facto protein.
          Length = 508

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 177 YRKTSGVKDAKLIVMNLASHRVSTTDGSHEGVLDVVGV 290
           Y  TSG+ D  L V+N  S   ST   SH  V +  GV
Sbjct: 417 YAPTSGLGDGSLTVLNAFSQAPSTMQVSHSQVQEPGGV 454


>AL133375-5|CAI20207.1|  508|Homo sapiens serum response factor
           (c-fos serum response element-binding transcription
           facto protein.
          Length = 508

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 177 YRKTSGVKDAKLIVMNLASHRVSTTDGSHEGVLDVVGV 290
           Y  TSG+ D  L V+N  S   ST   SH  V +  GV
Sbjct: 417 YAPTSGLGDGSLTVLNAFSQAPSTMQVSHSQVQEPGGV 454


>AF461690-1|AAN77932.1|  779|Homo sapiens DEAD-box containing
           helicase-like protein protein.
          Length = 779

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 113 RASAVAGEEPRRSLPRASAPTLQEDQRRQGC*IDRDELG 229
           R  AVAG  PRR      +  LQE++    C  DR+E G
Sbjct: 3   RFPAVAGRAPRRQEEGERSRDLQEERLSAVCIADREEKG 41


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,588,558
Number of Sequences: 237096
Number of extensions: 1081076
Number of successful extensions: 2940
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2940
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)