Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328A09f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73969-20|CAA98241.1| 643|Caenorhabditis elegans Hypothetical p... 59 6e-10
U21487-1|AAA96949.1| 643|Caenorhabditis elegans ribonucleoprote... 59 6e-10
L41729-1|AAC41575.1| 643|Caenorhabditis elegans Ro ribonucleopr... 59 6e-10
AL021479-8|CAA16325.1| 643|Caenorhabditis elegans Hypothetical ... 59 6e-10
U42833-5|AAA83580.1| 444|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z83220-2|CAB05701.2| 905|Caenorhabditis elegans Hypothetical pr... 29 1.5
AF022979-8|AAB69906.2| 330|Caenorhabditis elegans Serpentine re... 29 2.7
Z82052-7|CAD89750.1| 294|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z73969-20|CAA98241.1| 643|Caenorhabditis elegans Hypothetical
protein C12D8.11 protein.
Length = 643
Score = 58.8 bits (136), Expect(2) = 6e-10
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +3
Query: 156 PVRALQRYRKTSGVKDAKLIVMNLASHRVSTTDGSHEGVLDVVGVDKHVPQLIDAFALG 332
P A+++YR+ SG+ DAK+IVM + ++ S D S G+LD+ G D VPQ++ F G
Sbjct: 583 PFEAIKKYREASGIHDAKVIVMAMQAYDYSIADPSDAGMLDITGFDSAVPQIVHEFVTG 641
Score = 21.8 bits (44), Expect(2) = 6e-10
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 6 KSNVKFDVFINMVDRVT 56
++N+KFDVFI D T
Sbjct: 560 ENNLKFDVFIIYTDNDT 576
>U21487-1|AAA96949.1| 643|Caenorhabditis elegans ribonucleoprotein
Ro autoantigenhomolog protein.
Length = 643
Score = 58.8 bits (136), Expect(2) = 6e-10
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +3
Query: 156 PVRALQRYRKTSGVKDAKLIVMNLASHRVSTTDGSHEGVLDVVGVDKHVPQLIDAFALG 332
P A+++YR+ SG+ DAK+IVM + ++ S D S G+LD+ G D VPQ++ F G
Sbjct: 583 PFEAIKKYREASGIHDAKVIVMAMQAYDYSIADPSDAGMLDITGFDSAVPQIVHEFVTG 641
Score = 21.8 bits (44), Expect(2) = 6e-10
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 6 KSNVKFDVFINMVDRVT 56
++N+KFDVFI D T
Sbjct: 560 ENNLKFDVFIIYTDNDT 576
>L41729-1|AAC41575.1| 643|Caenorhabditis elegans Ro
ribonucleoprotein autoantigen protein.
Length = 643
Score = 58.8 bits (136), Expect(2) = 6e-10
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +3
Query: 156 PVRALQRYRKTSGVKDAKLIVMNLASHRVSTTDGSHEGVLDVVGVDKHVPQLIDAFALG 332
P A+++YR+ SG+ DAK+IVM + ++ S D S G+LD+ G D VPQ++ F G
Sbjct: 583 PFEAIKKYREASGIHDAKVIVMAMQAYDYSIADPSDAGMLDITGFDSAVPQIVHEFVTG 641
Score = 21.8 bits (44), Expect(2) = 6e-10
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 6 KSNVKFDVFINMVDRVT 56
++N+KFDVFI D T
Sbjct: 560 ENNLKFDVFIIYTDNDT 576
>AL021479-8|CAA16325.1| 643|Caenorhabditis elegans Hypothetical
protein C12D8.11 protein.
Length = 643
Score = 58.8 bits (136), Expect(2) = 6e-10
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +3
Query: 156 PVRALQRYRKTSGVKDAKLIVMNLASHRVSTTDGSHEGVLDVVGVDKHVPQLIDAFALG 332
P A+++YR+ SG+ DAK+IVM + ++ S D S G+LD+ G D VPQ++ F G
Sbjct: 583 PFEAIKKYREASGIHDAKVIVMAMQAYDYSIADPSDAGMLDITGFDSAVPQIVHEFVTG 641
Score = 21.8 bits (44), Expect(2) = 6e-10
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 6 KSNVKFDVFINMVDRVT 56
++N+KFDVFI D T
Sbjct: 560 ENNLKFDVFIIYTDNDT 576
>U42833-5|AAA83580.1| 444|Caenorhabditis elegans Hypothetical
protein ZK430.7 protein.
Length = 444
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 189 SGVKDAKLIVMNLASHRVSTTDGSHEGVLDVVGVDKH 299
SG +D ++ + NLAS T +H G+++ + +D +
Sbjct: 84 SGARDGQVKIWNLASRECQATLDAHRGLVNDISIDNN 120
>Z83220-2|CAB05701.2| 905|Caenorhabditis elegans Hypothetical
protein C34B7.2 protein.
Length = 905
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -1
Query: 278 VEHSFVAAVSRGHAVRCQVHHDQFSILDAAGLPVALE 168
VE ++ ++R HAV +H + I++ A +P+A++
Sbjct: 100 VEGYYLIIITRAHAVATLGYHPVYKIVEVAMIPIAMD 136
>AF022979-8|AAB69906.2| 330|Caenorhabditis elegans Serpentine
receptor, class j protein38 protein.
Length = 330
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 503 NFRTYCFHLICKHYWFSNIS 444
N+R YCF LI +H WF IS
Sbjct: 67 NYR-YCFFLILRHGWFVEIS 85
>Z82052-7|CAD89750.1| 294|Caenorhabditis elegans Hypothetical
protein T25E12.12 protein.
Length = 294
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 296 FVDADNVEHSFVAAVSRGHAVRCQVHHDQFSILDAAGLPVALERS 162
FV + ++E + H VR +VH D+FSI DA + L +S
Sbjct: 188 FVGSGDLEAYSITIQHLFHFVRFEVHIDRFSIEDAVSIRDKLLKS 232
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 268 ECSTLSASTNTCPN*STHSRWDTSTERNFILVFC 369
ECS + N+CP STHS TS F V C
Sbjct: 373 ECSPTGSGANSCP--STHSCESTSGSTTFGGVCC 404
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,954,543
Number of Sequences: 27780
Number of extensions: 181121
Number of successful extensions: 604
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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