Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328A07f
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    26   2.3  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   3.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   7.0  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 318 SKEIXTGNKLSRDLKESLKKIWRLRTKI 235
           S  +    KL  DLK  +KK+ RLR +I
Sbjct: 24  SNSVSQKEKLEGDLKTQIKKLQRLRDQI 51


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 212 HITNGSTVIFVRNRHIFFRDSFKSRESLFPV 304
           ++TNG TV +V    ++   +F S  S FP+
Sbjct: 46  YLTNGLTVYYVPLHTVYRETTFPSFFSFFPI 76


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 6   GAVCRGELQPTHRSDHSLNFFFL 74
           G +C G+L+ T  S+  LN F L
Sbjct: 396 GEICTGKLENTLFSNSELNLFLL 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,021
Number of Sequences: 5004
Number of extensions: 28050
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)