Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328A07f
         (380 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    24   0.52 
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    24   0.52 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   2.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   4.9  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   6.5  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   6.5  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   6.5  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 24.2 bits (50), Expect = 0.52
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 333 CNKQYSKEIXTGNKLSRDLKESLKKIW-RLRTK 238
           CNK   K+  T NK+   LK    K W RL  K
Sbjct: 72  CNKCNEKQKHTANKVVNYLKTKRPKDWERLSAK 104


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 24.2 bits (50), Expect = 0.52
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -3

Query: 333 CNKQYSKEIXTGNKLSRDLKESLKKIW-RLRTK 238
           CNK   K+  T NK+   LK    K W RL  K
Sbjct: 72  CNKCNEKQKHTANKVVNYLKTKRPKDWERLSAK 104


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 15  CRGELQPTHRSDHSLNFFFLFCVVLSAVLALYA 113
           C G ++ +H    +   F LF +++   +A+YA
Sbjct: 70  CCGAIRESHCMTITFASFLLFILLVQIAVAVYA 102


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 15/70 (21%), Positives = 30/70 (42%)
 Frame = +3

Query: 15  CRGELQPTHRSDHSLNFFFLFCVVLSAVLALYACKFPRXTAGSLGTIFRGTYFEPPARLA 194
           C  +L PT+    S   F++ C+V+  +     C + +    S+  + +     P   +A
Sbjct: 184 CALDLTPTYAVVSSSISFYVPCIVMLGIYCRLYC-YAQKHVKSIRAVTK----LPDTSMA 238

Query: 195 HSVIRNISQT 224
            S +R +  T
Sbjct: 239 KSFVRKVHAT 248


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 241 ENHRRTVCDML 209
           + HRR  CD+L
Sbjct: 39  DRHRRVTCDLL 49


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 241 ENHRRTVCDML 209
           + HRR  CD+L
Sbjct: 39  DRHRRVTCDLL 49


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 241 ENHRRTVCDML 209
           + HRR  CD+L
Sbjct: 14  DRHRRVTCDLL 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,911
Number of Sequences: 438
Number of extensions: 1985
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)