Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328A04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 30 0.24
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 28 0.97
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 1.3
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 3.0
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 3.0
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 26 3.9
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 6.8
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 9.0
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 25 9.0
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 29.9 bits (64), Expect = 0.24
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 151 EAGSCQSDELVEPLDAARDMLAAQERMYPHLFASLKSALRPLMSGRFIDKDKKEQRHRKK 330
E G CQ D++ EP ++ ++ Q R+Y L +++ L+ + + K +KE H +
Sbjct: 42 EEGKCQLDKVAEPQGLSKRIMDLQGRIY-DLNVTMEKKLK-IEEKKIKSKQEKEIAHALQ 99
Query: 331 SV 336
S+
Sbjct: 100 SI 101
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 167 SPTSSSNHSTPLGTCSRHRSECTRTCSRASRV 262
SP+++ NH +P +C R S C + S +SRV
Sbjct: 160 SPSTAQNHRSPPASCKR-LSSCESSGSPSSRV 190
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 110 SPVRPPGLVHRPNVRPARVSPTSSSNHSTPLGTCS 214
+PV P G + P RP P+S S+HS+P T S
Sbjct: 159 TPVSPGGSLVHPLPRPPL--PSSVSSHSSPYSTTS 191
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 125 PGLVHRPNVRPARVSPTSSSNHSTP 199
P +H P V P P+S SN+ +P
Sbjct: 172 PNNIHPPEVAPMIAIPSSRSNYDSP 196
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +1
Query: 181 VEPLDAARDMLAAQERMYPHLFASLKSALRPLMSGRFIDKDKK 309
V D+ +++L+ E +PH++ S + P+++ F+ +DK+
Sbjct: 151 VSAKDSFKNLLS--EEKWPHVWLKFGSTIAPIVTDVFLHEDKE 191
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 125 PGLVHRPNVRPARVSPTSSSNHSTP 199
P ++H+P++ A +P SS STP
Sbjct: 542 PSILHKPSLESASSTPKISSCSSTP 566
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.0 bits (52), Expect = 6.8
Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Frame = +1
Query: 10 APCQISARCNLPRHRSPRHPQTIVATAGKS*VXVACAAPGPRASTQREAGSCQSDE---L 180
+P I R + ++ + R + + + VA R ++E ++E L
Sbjct: 834 SPTSIEQRAKMAKNTTKRQLERAIQAQIEYEKSVAAKLEDARIQREKEKARRLAEEEALL 893
Query: 181 VEPLDAARDMLAAQERMYPHLFASLKSALRPLMSGRFI--DKDKKEQRHRKKSVIQMKNG 354
E + R + +++M + KS + + D++K+ + +KK + K+
Sbjct: 894 KEKQERERQLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEEKQSGKKKKKDRKKRKSK 953
Query: 355 APVYDSDDG-TEEEPVP 402
+ SD G +E++ +P
Sbjct: 954 SKQESSDSGVSEDDEIP 970
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 196 AARDMLAAQERMYPHLFASLKSALRPLMSGRFIDKDKKEQRHRKKSVIQMKNGA 357
A++ L + E + P L+ +S GR++D D +E K +NG+
Sbjct: 43 ASKRKLQSTEWLDPELYGLRRSGRTRSNPGRYVDTDDQEDVFPSKHRKGTRNGS 96
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +3
Query: 231 VPALVREPQECTA 269
VPA+VRE Q+CTA
Sbjct: 137 VPAVVRELQKCTA 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,429
Number of Sequences: 5004
Number of extensions: 36433
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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