Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328A04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1014 - 25316682-25317236 33 0.18
01_05_0809 - 25422832-25422919,25423887-25424443 29 1.7
11_06_0372 + 22781438-22781977 28 5.2
09_02_0489 - 9847903-9848081,9848916-9849107,9849195-9849276,984... 28 5.2
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 27 6.9
07_01_0500 + 3744062-3744847 27 6.9
03_01_0030 + 290232-291020 27 6.9
07_01_1079 + 9770444-9772756 27 9.1
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 27 9.1
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875... 27 9.1
01_05_0577 - 23383987-23384097,23384120-23384188,23384217-233843... 27 9.1
>12_02_1014 - 25316682-25317236
Length = 184
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 113 PVRPPGLVHRPNVRPARVSPTSSSNHS 193
PV PP +VHRP RPA P SS S
Sbjct: 119 PVAPPVVVHRPTPRPAVAMPMSSPRGS 145
>01_05_0809 - 25422832-25422919,25423887-25424443
Length = 214
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 256 KSALRPLMSGRFIDKDKKEQRHRKKSVIQMKNGAPVYDSDD 378
+S L PL + D +EQR R ++ +Q + P+YD+DD
Sbjct: 106 RSRLEPLPTPTAA-ADTEEQRLRLENAVQTNSRRPLYDNDD 145
>11_06_0372 + 22781438-22781977
Length = 179
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/49 (24%), Positives = 29/49 (59%)
Frame = +1
Query: 247 ASLKSALRPLMSGRFIDKDKKEQRHRKKSVIQMKNGAPVYDSDDGTEEE 393
A+++S+ R L+ F ++ + + ++ ++++G P+ DSD +EE
Sbjct: 115 AAMESSGRFLVDAGFFERRARGRAKLNEAWAKLRDGLPLSDSDSDADEE 163
>09_02_0489 -
9847903-9848081,9848916-9849107,9849195-9849276,
9849529-9849722,9851009-9851601,9851827-9851870
Length = 427
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 161 RVSPTSSSNHSTPLGT-CSRHRSECTRTCSRASRVHCAH 274
R SPT+++NH++P C++ RS+ R H H
Sbjct: 108 RRSPTAAANHASPAANGCAQRRSQGAYEVQRRPPHHIIH 146
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 27.5 bits (58), Expect = 6.9
Identities = 22/85 (25%), Positives = 34/85 (40%)
Frame = +1
Query: 127 GPRASTQREAGSCQSDELVEPLDAARDMLAAQERMYPHLFASLKSALRPLMSGRFIDKDK 306
GP S E+G SDE + +D A+ + H+ + L+S + K K
Sbjct: 495 GPTTSAYNESGGSDSDERDDTVDPAQPDMR-------HVLSDLESFDLATEGSKPAGKKK 547
Query: 307 KEQRHRKKSVIQMKNGAPVYDSDDG 381
KE H++ Q K +DG
Sbjct: 548 KEASHKQHKKPQRKKDRSWRVGNDG 572
>07_01_0500 + 3744062-3744847
Length = 261
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +1
Query: 91 GKS*VXVACAAPGPRASTQREAGSCQSDELVEPLDAARDM 210
G S V V C APGP A+ AG +S+E VE A M
Sbjct: 188 GASRVTVNCVAPGPVATELFFAG--KSEEAVERFKAGNPM 225
>03_01_0030 + 290232-291020
Length = 262
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +1
Query: 43 PRHRSPRHPQTIVATAGKS*VXVACAAP--GPRASTQREAGSCQSDELVEPLDA-ARDML 213
P HR+P HP + A G + A P G A+ + + + EL P D A +L
Sbjct: 47 PDHRTPMHPSSAGAPPGTAPDGAAVVPPTAGAAAALNQRRRTTIAPELPHPRDGPALPLL 106
Query: 214 AAQERMYPH 240
R H
Sbjct: 107 RLHRRTIAH 115
>07_01_1079 + 9770444-9772756
Length = 770
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 205 DMLAAQERMYPHLFASLKSALRPLMSGRFIDKDKKEQRHRKKSVIQMKNGAPVY 366
D+L +E+M+P + ++LK + + D+ KKEQ K M G Y
Sbjct: 263 DLLYTKEKMFPIILSALKRQQNYVNTNVDTDEGKKEQETLKGFCGSMLRGLLPY 316
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 301 DKKEQRHRKKSVIQMKNGAPVYDSDDGTEEEPVP*IMSN 417
D+ + S IQ +GAP + D E P+P +SN
Sbjct: 193 DEMQNNVEGSSEIQEDDGAPTLEQQDDESEMPLPSSVSN 231
>02_05_0602 + 30283893-30284170,30286259-30286305,30286534-30287510,
30287611-30287920,30288561-30290197
Length = 1082
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 119 RPPGLVHRPNVRPARVSPTSSSNHSTPLGTCSRHRSECT 235
RP + ++ ARV SSS + PL C HR CT
Sbjct: 902 RPKKMTILKRLKDARVHNHSSSKNP-PLNVCPVHRGVCT 939
>01_05_0577 -
23383987-23384097,23384120-23384188,23384217-23384372,
23384381-23384539
Length = 164
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 149 VRPARVSPTSSSNHSTPLGTCSRHRSECTRTCSRASRVH 265
+R +R +++ S CS+H+ + R C+R S+ H
Sbjct: 1 MRRSRHGVNTNTRSSNEEAQCSKHQRQRQRMCNRGSQPH 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,796,601
Number of Sequences: 37544
Number of extensions: 283290
Number of successful extensions: 1018
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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