Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328A04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical ...    34   0.071
Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.      29   2.7  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    28   4.7  

>AC024202-8|AAK93869.2|  816|Caenorhabditis elegans Hypothetical
           protein Y71H2B.5 protein.
          Length = 816

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +1

Query: 202 RDMLAAQERMYPHLFASLKSALRPLM 279
           + +LA QE ++P LF SL+SAL+PL+
Sbjct: 768 KQLLAQQELIFPDLFNSLRSALKPLL 793


>Z67990-5|CAA91936.2|  638|Caenorhabditis elegans Hypothetical
           protein F02D10.5 protein.
          Length = 638

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/56 (23%), Positives = 32/56 (57%)
 Frame = +1

Query: 229 MYPHLFASLKSALRPLMSGRFIDKDKKEQRHRKKSVIQMKNGAPVYDSDDGTEEEP 396
           ++ +LF S+   +      +F+D   +E++ R +S++ ++NG     +DD  +++P
Sbjct: 447 IFIYLFKSVWGTVNSTRQQQFVDAVAEEEKERSESIVIIQNGR----NDDMDDQKP 498


>AB012617-1|BAA33488.1|  638|Caenorhabditis elegans FLR-1 protein.
          Length = 638

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/56 (23%), Positives = 32/56 (57%)
 Frame = +1

Query: 229 MYPHLFASLKSALRPLMSGRFIDKDKKEQRHRKKSVIQMKNGAPVYDSDDGTEEEP 396
           ++ +LF S+   +      +F+D   +E++ R +S++ ++NG     +DD  +++P
Sbjct: 447 IFIYLFKSVWGTVNSTRQQQFVDAVAEEEKERSESIVIIQNGR----NDDMDDQKP 498


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
            protein W05F2.7 protein.
          Length = 1424

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 268  RPLMSGRFIDKDKKEQRHRKKSVIQMKNGAPVYDSDDGTEEEP 396
            RP + G F+ K K E+RH++ S  + K      D+DD   E P
Sbjct: 1285 RPFVDGEFLKK-KMERRHKRISEGKKKRLIGEDDADDEWPEMP 1326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,352,334
Number of Sequences: 27780
Number of extensions: 229128
Number of successful extensions: 813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)