Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS328A02f
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    29   0.38 
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    28   0.88 
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    26   2.7  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   3.5  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.5  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   4.7  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   4.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   6.2  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   8.2  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.2  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 29.1 bits (62), Expect = 0.38
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 122 KPLPEEVTKQSYRVKVWRHLETNGLAVFPRPV 217
           +P+P  VTK  +  K W+H E      FPRPV
Sbjct: 377 RPVPHNVTKPDH--KPWKHEEHCHHGKFPRPV 406



 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 110 DNTKKPLPEEVTKQSYRVKVWRHLETNGLAVFPRPV 217
           D   +P+P   TK  +  K W+H E      FPRPV
Sbjct: 178 DKFPRPVPHNGTKPDH--KPWKHEEHCHHGKFPRPV 211



 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 110 DNTKKPLPEEVTKQSYRVKVWRHLETNGLAVFPRPV 217
           D   +P+P   TK  +  K W+H E      FPRP+
Sbjct: 263 DKFPRPVPHNGTKPDH--KPWKHEEHCHHGKFPRPI 296



 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 122 KPLPEEVTKQSYRVKVWRHLETNGLAVFPRPV 217
           +P+P   TK  +  K W+H E      FPRPV
Sbjct: 294 RPIPHNGTKPDH--KPWKHEEHCHHGRFPRPV 323


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 221 NRIPNF--KGAQEAAAKLAELDVFKNANTVKVNPDKPQE 331
           N+ P F   GA+   ++L ELD++KN       P KP E
Sbjct: 219 NQRPTFLGMGAKPVDSELTELDIWKNPKKTMFLPVKPLE 257


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
 Frame = -3

Query: 433 SPSGQLQAVQEAGLEP----WHRNVQSLLLFEAYHPNRLLRFIRVNFHGVRILEYVQLG* 266
           SP G   AV E  L+     +HR     LLF  Y PNRL+     +F      +Y+ L  
Sbjct: 198 SPDGNWLAVLENVLDAVVYIYHRTG---LLFHEYRPNRLIEVGFSDFEWSPFGKYLTLCS 254

Query: 265 FSGRLLSPFEVRNSVVYGAREHC 197
           +    L   E +   +     HC
Sbjct: 255 YHDSTLHLLETKTFSIVFRLHHC 277


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 435 VHLRGSSRRFRKPVWSRGTGTYKVFCCSRHITLT 334
           +HL         P WS GTG   +F  S ++ +T
Sbjct: 118 LHLSSRYHSVSLPCWSSGTGLAGLFGASSYLVMT 151


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -1

Query: 240 LKFGILLYTGRGNTASPFVSR*RHTLTRYDCLVTSSGSGFLVLSTAVGVPS 88
           L  G+++YT  G   + F+S   HT+  Y  L+ +  + +   S+ +G P+
Sbjct: 171 LPLGVMVYTTLGGLKATFISDWIHTVMIYIILIVTCYTVY-CSSSLIGSPA 220


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 414 RRFRKPVWSRGTGTYKVFCCS 352
           R+FR+ +W +  G  KV+ CS
Sbjct: 346 RKFREDLWKKRHGKRKVYQCS 366


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 209 RPVYNRIPNFKGAQEAAAK-LAELDVFKNANTVKVNPDKPQEP 334
           RPV  R  N + A++     L E+D  ++ NT  V  D PQEP
Sbjct: 596 RPVSERY-NEQIAEDVLCDILDEIDYAEDPNTSSVTIDVPQEP 637


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 21/61 (34%), Positives = 25/61 (40%)
 Frame = +1

Query: 286 QECEHRES*PG*TAGAC*GDMPRTAEDFVRSGATAPDRLPEPPGAAPKVNLDRLPLGRPF 465
           Q+ E R S P    G   G MP+       S + AP   P PP   P+  L R P   P 
Sbjct: 90  QQAEERPSMPA-LGGLFAGGMPKLRHIGKSSASAAPPSAPAPP--TPQSEL-RPPTSAPP 145

Query: 466 R 468
           R
Sbjct: 146 R 146


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 400 AGLEPWHRNVQSLLLFEAYHPNRLLR 323
           A LEPWH +V   L     H N   R
Sbjct: 299 AYLEPWHADVMDFLELRKTHGNEDFR 324


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +2

Query: 128 LPEEVTKQSYRVKVWRHL---ETNGLAVFPRPVYNRIPNFKGAQE 253
           LP EVTK +    VW+ +   +  GL+V   P+     +    QE
Sbjct: 173 LPSEVTKDTAEESVWKDIGLDQETGLSVTAIPIITETLDHAHEQE 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,066
Number of Sequences: 5004
Number of extensions: 40166
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)