Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS328A02f
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 100 7e-22
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260... 32 0.29
06_03_0876 - 25593744-25594046,25594747-25594902,25594986-255950... 29 1.5
06_02_0301 - 14013187-14013582 29 2.0
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 29 2.7
11_03_0038 - 9142692-9143083,9143665-9143686,9143763-9143806,914... 28 3.5
09_01_0011 + 291315-292277 28 4.7
05_04_0223 - 19192411-19192951,19193363-19193388 28 4.7
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 28 4.7
02_05_1319 + 35691408-35691779 28 4.7
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972... 27 6.2
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 27 8.2
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288... 27 8.2
03_06_0252 - 32656068-32656276,32656361-32656550,32656682-326567... 27 8.2
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 27 8.2
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 100 bits (239), Expect = 7e-22
Identities = 54/116 (46%), Positives = 70/116 (60%)
Frame = +2
Query: 71 AKMQNGDGTPTAVDNTKKPLPEEVTKQSYRVKVWRHLETNGLAVFPRPVYNRIPNFKGAQ 250
A+ + G + AV + P+ K + R +VW LE G+A PRPV++RIPNF GA
Sbjct: 467 AEARAGMASAAAVAGAEAADPK-AWKWAIRKRVWDALEAEGVARDPRPVHHRIPNFDGAA 525
Query: 251 EAAAKLAELDVFKNANTVKVNPDKPQEPVRVICLEQQKTLYVPVPRLQTGFLNRLE 418
AA L LDVF++A VKVNPD PQ+ VR + L K L P PRL+TGF + LE
Sbjct: 526 AAADSLGRLDVFQDAQCVKVNPDSPQKQVRFLTLSGDKKLLTPQPRLRTGFFSVLE 581
>05_07_0148 +
28024820-28025293,28025655-28025702,28026034-28026080,
28026334-28026496,28026595-28026656,28026820-28027003,
28027093-28027182,28027553-28027686,28027747-28027936,
28028103-28029033,28029860-28030065
Length = 842
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +2
Query: 128 LPEEVTKQSYRVKVWRHLETNGLAVFPRPVYNRIPNFKG--AQEAAAK 265
L E++T R V R +++NG+A F +++ PN G AQEA A+
Sbjct: 87 LTEDITTTKCRAAVRRLMDSNGVAAFDVVLHDGSPNVGGAWAQEATAQ 134
>06_03_0876 -
25593744-25594046,25594747-25594902,25594986-25595095,
25595429-25595520,25595613-25595657,25595775-25595920,
25596027-25596114,25596251-25596281,25596388-25596413,
25596617-25596939
Length = 439
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = +3
Query: 102 QPWITPKSHCPKR*PSNRIASKYGVT-SRRTG------WQCSRAPYTTEFRTSKGLRR 254
+ W P S +R P +R + GVT RRTG W C + Y F T++ R
Sbjct: 70 EQWARPPSRKTRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAAR 127
>06_02_0301 - 14013187-14013582
Length = 131
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 349 PRTAEDFVRSGATAPDRLPEPPGAA 423
PR A ++S A AP R P+PP AA
Sbjct: 13 PRAAPSSMQSAAPAPARPPQPPPAA 37
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 200 VFPRPVYNRIPNFKGAQEAAAKLAELDVFKN---ANTVKVNPDK-PQEPVRV 343
VFPR Y R+ + A++AAAKLA+ N T KV P++ P RV
Sbjct: 1595 VFPRD-YKRVLDNMKAEKAAAKLAKEPKISNGVSVTTKKVQPEQSTNRPTRV 1645
>11_03_0038 -
9142692-9143083,9143665-9143686,9143763-9143806,
9143959-9144133
Length = 210
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -3
Query: 190 VRLEVTPYFDAIRLLGYLFGQWL-FGVIHGCRRTVSVLHFSYF 65
V E PY+ + Y G L +GVI CRRT+ ++H + F
Sbjct: 42 VAREAAPYYGSSEKRRY--GMILMYGVILNCRRTMQMVHLTVF 82
>09_01_0011 + 291315-292277
Length = 320
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 19 FSFRSLKLNLAPLNGRNS*NAERRRYADSRG*HQKATARRGNQAIVSRQSMAS---PRDE 189
+S+RSL +LA NG S NA+ + G QA R+S + P +E
Sbjct: 5 WSWRSLFSSLANANGGGS-NADA---SSGSGTSSSPPVHEAQQAAARRRSARTKKPPEEE 60
Query: 190 RAGSVPAPR 216
AGS P P+
Sbjct: 61 AAGSQPQPK 69
>05_04_0223 - 19192411-19192951,19193363-19193388
Length = 188
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 144 PSNRIASKYGVTSRRTGWQCSRAPYTTEFRTSKGLRRRP 260
P ++A ++R TGW + AP ++ T++ RRP
Sbjct: 120 PDRKVAMAPAGSARPTGWNAAAAPSSSASWTARWQGRRP 158
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 82 ERRRYADSRG*HQKATARRGNQAIVSRQSMASPRDERAGSVPAPRIQQNSEL 237
ERR+ R G I + + + R E AG +PAPRI+ EL
Sbjct: 530 ERRKSRWDRADEIPEDVEMGMGEIEAAGELTATRIETAGELPAPRIETAGEL 581
>02_05_1319 + 35691408-35691779
Length = 123
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 343 DMPRTAEDFVRSGATAPDRLPEPPGAAP 426
D+ R A D V AT +P PP AAP
Sbjct: 52 DLVRAAADRVAFNATGNAHVPPPPAAAP 79
>11_04_0454 -
17895935-17896093,17896878-17896911,17897114-17897252,
17897487-17897561,17897666-17897945
Length = 228
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 28 RSLKLNLAPLNGRNS*NAERRRYADSRG*HQKATARRGNQAIVSRQSMASPRD-ERAGSV 204
R K++ PL R R R A R HQ+ RRG Q +R+ +SP+ E+ ++
Sbjct: 5 RKRKVSREPL--RRGRQDLRLRQARRRRHHQRHRRRRGGQPAPNRRGTSSPKTLEKRRTL 62
Query: 205 PAPRIQQN 228
P +++ +
Sbjct: 63 PVWQLKDD 70
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 167 VWRHLETNGLAVFPRPVYNRIPNFKGAQEAAAKLAE 274
+W HL TN P V ++ + A AA +A+
Sbjct: 1298 IWSHLSTNSKGKLPAEVEEKLTSAAAAASAAVSVAK 1333
>08_02_1267 +
25728324-25728407,25728436-25728502,25728753-25728828,
25729388-25729450,25729640-25729896,25731299-25731440,
25731524-25732017,25732398-25732536,25733805-25733876,
25733960-25734040,25734677-25734843,25734942-25735147,
25735301-25735427,25735515-25735639
Length = 699
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 253 LLSPFEVRNSVVYGAREHCQPVRLEVTPY 167
++ P R+ +GA+E +P+RLEV Y
Sbjct: 37 IVPPSHSRSICSFGAQESSEPIRLEVNIY 65
>03_06_0252 -
32656068-32656276,32656361-32656550,32656682-32656780,
32656917-32657012,32657200-32658153,32658476-32658694,
32658911-32659120,32659241-32659503,32659605-32661281,
32663639-32663792
Length = 1356
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -3
Query: 337 NRLLRFIRVNFHGVRILEYVQLG*FSGRLLSPFEVRNSVVYGAREHCQPVRLEVTPYFDA 158
N + R + + +H VRI+ G F G+ + V + A + +PVR+ + D
Sbjct: 808 NTVARCLGIPYHNVRIITRRVGGGFGGKAMKAIHVATACAVAAFKLRRPVRMYLDRKTDM 867
Query: 157 I 155
I
Sbjct: 868 I 868
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 324 RRSLLG*YASNSRRLCTFRCHGSRPAS*TAWSCP-EGEPGPAAI 452
RR+ + YA+ LC G P AW P GEP AA+
Sbjct: 414 RRAAVSAYAALCAVLCAHEAPGGLPDRFVAWGLPLLGEPTSAAL 457
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,843,855
Number of Sequences: 37544
Number of extensions: 296316
Number of successful extensions: 982
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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