Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327H12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 29 0.42
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 28 0.97
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 27 1.7
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 27 1.7
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 5.2
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 25 6.8
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 6.8
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 9.0
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 25 9.0
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 9.0
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 29.1 bits (62), Expect = 0.42
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 298 QRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLQQLPDEQGRIREALQELSDDSW 477
+R+ R P SE G S T F + L+++PD+QG I A L +S+
Sbjct: 20 RRLSRSSTITPSVSEYRSGFSKTAFGN--------IELEEIPDKQGNITRATSNLESNSY 71
Query: 478 EKXL 489
K L
Sbjct: 72 PKAL 75
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 27.9 bits (59), Expect = 0.97
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Frame = +1
Query: 187 GVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTE--GIS 360
G+ CL GC G G +L+ + R + A R + + E E G+
Sbjct: 292 GIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVG 351
Query: 361 LTVFETFLPLS--PVGLLLQQLP 423
+L LS P +L ++LP
Sbjct: 352 PEKDHCYLQLSHLPAEILKERLP 374
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 201 SLPVWLWVCWPRKTHAIRTSTKDA 272
++P+ LW+C P T + TST+DA
Sbjct: 94 NVPITLWICAP-LTAILSTSTRDA 116
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 105 KAVLSTYVKRTCYFFENS 158
KAV YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +2
Query: 23 NYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK 166
NYN+ C H D L +A CA CK + H EF TK
Sbjct: 16 NYNIWIDCDPGHDDVVALTLAACAGHCK--ILGVSTVHGNTTLEFTTK 61
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 352 GISLTVFETFLPLSPVGLLLQQLPDEQGRIREALQELSDDS 474
GI L V FLP SP L+ + +E RI + ELS +S
Sbjct: 189 GILLMVGVLFLPESPRYLIYKGRDEEALRIMCNMAELSPES 229
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 160 H*INRIKYEGVCSHRCL 210
H I+R++ +GVC RCL
Sbjct: 446 HAISRVEAQGVCVDRCL 462
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 160 GEFSKK*QVRLTYVESTAFTHTGAEGD 80
GE + R+ YV AFTH G D
Sbjct: 729 GEIYQHENCRIAYVAQAAFTHLGHHPD 755
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 377 RSYHYLLSASYFNNYQTNREGFAKLFRNYRTIRGRXHW 490
R HY NNY+ REG YR RG W
Sbjct: 79 RGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQW 116
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -3
Query: 183 IFDAIYLVANSRKNNKCV*RMSKVLPLHTLAQKATSNNDSSR*KRPHKDNRL 28
+ D +YL +S ++ + +VLP+ +K SN+ S + DN +
Sbjct: 901 VVDRVYLKKSSTRHTSDNNSLEEVLPIFPGVRKLVSNSQSEKIGDLSNDNSM 952
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,709
Number of Sequences: 5004
Number of extensions: 39736
Number of successful extensions: 111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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