Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327H09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0441 + 3130906-3131424,3131847-3132269                           30   0.98 
07_01_0220 - 1631395-1631496,1632063-1634036                           28   5.2  
12_01_0389 + 3067808-3069121                                           27   6.9  
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008     27   6.9  
01_03_0146 + 13120727-13121037,13121063-13121912,13122854-131235...    27   6.9  

>06_01_0441 + 3130906-3131424,3131847-3132269
          Length = 313

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 445 LFVHKLHLHSIHLGQHMWCALICTTELQIL 356
           L  ++LH H IHL  ++ CAL C+  + +L
Sbjct: 280 LMFYRLHAHGIHLVLNLSCALQCSRSVVLL 309


>07_01_0220 - 1631395-1631496,1632063-1634036
          Length = 691

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 16  RNFTSLLXENKKSLDCFHLVYNPS*TAS 99
           RNF  L    KK  D + + YNPS T S
Sbjct: 633 RNFNELASMRKKGFDPYIMSYNPSSTGS 660


>12_01_0389 + 3067808-3069121
          Length = 437

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 8   VTSETSLRYYXKIRNRWIVSIWSTTPHKQPPLDLTEL 118
           VTS T + Y  +  +RW+ +  S+ P    PL L++L
Sbjct: 22  VTSPTGISYDRRAIHRWLAAGHSSCPVTGHPLSLSDL 58


>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
          Length = 749

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +2

Query: 44  IRNRWIVSIWSTTPHKQPPLDL 109
           IR  WI+ +W++   ++PP+++
Sbjct: 95  IRKMWIILLWASPTRRRPPVNM 116


>01_03_0146 +
           13120727-13121037,13121063-13121912,13122854-13123561,
           13123596-13123943
          Length = 738

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +2

Query: 44  IRNRWIVSIWSTTPHKQPPLDL 109
           IR  WI+ +W++   ++PP+++
Sbjct: 95  IRKMWIILLWASPTRRRPPVNM 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,782,171
Number of Sequences: 37544
Number of extensions: 212253
Number of successful extensions: 522
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)