Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327H06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1577 + 34554819-34554995,34555672-34555754,34555906-345562...    27   6.9  

>04_04_1577 +
           34554819-34554995,34555672-34555754,34555906-34556229,
           34556347-34556602,34556951-34557031,34557106-34557213,
           34557300-34557329,34557475-34557612,34557737-34557774,
           34557858-34557957,34558194-34558268
          Length = 469

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +1

Query: 178 FNFLFVASQTKFPKLXNPLRAIFVFRQVPIFLNDEGFTF--YFVLKXNIGYQH 330
           F F+ V S T  P+  NP   IF  R+    +N  GF      V+   +G QH
Sbjct: 167 FGFVEVGSVTPLPQEGNPKPRIFRLREHGAVINRCGFNSEGIVVVAKRLGAQH 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,946,876
Number of Sequences: 37544
Number of extensions: 147950
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)