Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327H05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    46   3e-06
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    43   2e-05
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    40   2e-04
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    40   2e-04
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    40   2e-04
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    40   2e-04
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    40   2e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    38   7e-04
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    28   0.73 
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun...    26   3.0  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   3.9  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    25   6.8  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   9.0  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   9.0  

>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 22/55 (40%), Positives = 35/55 (63%)
 Frame = +3

Query: 351 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDD 515
           ML+ +KTL  +  +++IDP + V  +K ++E ++G       QRLIYAGK + DD
Sbjct: 1   MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEG--IPPSQQRLIYAGKQMADD 53


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 22/55 (40%), Positives = 34/55 (61%)
 Frame = +3

Query: 351 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDD 515
           M +T K LQQQ F I  D     K  +LK +++  +++  + Q+LIY+G+IL DD
Sbjct: 1   MNLTFKNLQQQKFVIS-DVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADD 54


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +3

Query: 351 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLD 512
           M + +KTL  +T  +E++  +T+  +K KI+ ++G     D QRLI+AGK L D
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLED 52


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +3

Query: 351 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLD 512
           M + +KTL  +T  +E++  +T+  +K KI+ ++G     D QRLI+AGK L D
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLED 52


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +3

Query: 351 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLD 512
           M + +KTL  +T  +E++  +T+  +K KI+ ++G     D QRLI+AGK L D
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLED 52


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +3

Query: 351 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLD 512
           M + +KTL  +T  +E++  +T+  +K KI+ ++G     D QRLI+AGK L D
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLED 52



 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +3

Query: 351 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLD 512
           M + +KTL  +T  +E++  +T+  +K KI+ ++G     D QRLI+AGK L D
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLED 128



 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +3

Query: 351 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLD 512
           M + +KTL  +T  +E++  +T+  +K KI+ ++G     D QRLI+AGK L D
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLED 204



 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +3

Query: 351 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLD 512
           M + +KTL  +T  +E++  +T+  +K KI+ ++G     D QRLI+AGK L D
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLED 280



 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +3

Query: 351 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLD 512
           M + +KTL  +T  +E++  +T+  +K KI+ ++G     D QRLI+AGK L D
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLED 356


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 34/54 (62%)
 Frame = +3

Query: 351 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLD 512
           M + +KTL  +T  +E++  +T+  +K KI+ ++G     D QRLI+AGK L D
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLED 52


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = +3

Query: 357 VTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDD 515
           +T+K    Q + + +D E +V ALK  I      D   + QRLIYAG++L D+
Sbjct: 6   LTIKAANDQKYAVTVDSESSVLALKEAIAPVA--DIEKERQRLIYAGRVLKDE 56


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +3

Query: 297 RFGTRPRAEFGTRKKSVKMLVTLKTLQQQTFQIEIDPE--ETV-KALKLKIEVEKGKDFV 467
           R G+RP+  +  RKK  + ++ ++ L   ++ + I+P+  ET  K LK K   +  K  +
Sbjct: 68  REGSRPKENYNARKKKEQGILQMERL-NSSYDLLIEPQSHETPGKPLKKKSRSKTPKREI 126

Query: 468 ADHQR 482
           A  QR
Sbjct: 127 ARRQR 131


>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
           Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 75  ELRRTLGLAAAKARKQAK 22
           ELR+TLG A+A  RK+A+
Sbjct: 115 ELRKTLGAASATGRKRAR 132


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 235 NYVSTLSAEINKPIYLLPASADSARGLVPNSARGR 339
           N ++ LS EINK I   P   D A      +ARGR
Sbjct: 2   NSIARLSDEINKAILATPLDDDEADKEKLANARGR 36


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 336 KKSVKMLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGK 458
           K+    LVTLK    + F++E+D ++  +    +I++  G+
Sbjct: 506 KEHASTLVTLKQKSDKVFELELDIKDMRELYVSQIDILAGR 546


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +3

Query: 300 FGTRPRAEFGTRKKSVKMLVTLKTLQQQTFQIEIDPEETVKAL-KLKIE----VEKGKDF 464
           FG RP    G + +  K++  L+T +++T   ++  +E  +   KL ++      +    
Sbjct: 91  FGYRPIVFSGKQDQKSKVIQCLRT-ERKTIPDDLVEDEVDRFYNKLGLDDYYFQMEPVSI 149

Query: 465 VADHQRLIYAGKI 503
           +ADH  +IYA KI
Sbjct: 150 IADHIEIIYAAKI 162


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 229 MRNYVSTLSAEINKPIYLLPASAD 300
           M+ Y + L  ++N P Y  PAS D
Sbjct: 403 MKLYENILEGKVNYPSYFSPASID 426


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,550,804
Number of Sequences: 5004
Number of extensions: 26320
Number of successful extensions: 88
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)