Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327H04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0630 - 8354628-8355803,8355837-8355926                           30   1.3  
09_04_0520 + 18286435-18287279,18287818-18288697                       29   3.0  
11_06_0513 + 24466131-24469487                                         28   4.0  
12_01_0837 - 7817748-7817780,7818010-7818109,7819338-7819399,782...    27   9.1  
10_07_0035 - 12173011-12173730                                         27   9.1  
08_01_0040 - 287030-287569,287981-288196,288269-288535                 27   9.1  
05_01_0128 + 866817-866859,867789-867874,868142-868231,868337-87...    27   9.1  
02_04_0432 + 22885880-22886168,22886755-22886801,22888496-22888939     27   9.1  

>04_01_0630 - 8354628-8355803,8355837-8355926
          Length = 421

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 70  LVSIAVSNANILQGTVDINRLQTILKDNLKSKDVG 174
           ++S+ V + NI+  T DIN  +  LK   + KD+G
Sbjct: 76  IISVYVDDLNIIGNTQDINEARHHLKTEFEMKDLG 110


>09_04_0520 + 18286435-18287279,18287818-18288697
          Length = 574

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 319 QNSLKPEVLATPTQALDKKDVTIQELYLAVYTLKALGKGTIYD 447
           Q SL PE++A PT A     V   E YLA   +K  G G+  D
Sbjct: 401 QASLFPELIAEPTDARSMSFVGTHE-YLAPEIIKGEGHGSAVD 442


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
 Frame = +1

Query: 58  QLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLYYAVRGLKQLKADVPNICE 237
           +L  LVS+ +S   I      I ++ ++   NL   D+G L  ++  L+ L+    + CE
Sbjct: 661 RLQYLVSLNISQTCIATVPDYIGKIHSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCE 720

Query: 238 DLKTIKYDV--------KNLEQVFYLTNLAL-LTNCQNSLKPEVLATPTQALDK 372
            L  +  ++         +LE  +YL+ +   ++N +N  +  VL  P  +LDK
Sbjct: 721 KLTKLPQNIGSVTSLQRLDLEGCYYLSEMPQDISNLKNVKELNVLECP--SLDK 772


>12_01_0837 -
           7817748-7817780,7818010-7818109,7819338-7819399,
           7820735-7820760,7820775-7820874,7821084-7821181,
           7821940-7822027,7822358-7822428,7823889-7824000
          Length = 229

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
 Frame = +1

Query: 223 PNIC-EDLKTIKYDVKNLEQVFYLTNLALLTNCQNSLKPEVLATPTQALDKKDVTIQELY 399
           PNI  + L   +     LE  F L+  A  T C      EVL      ++K D  +  +Y
Sbjct: 118 PNISVQSLAKDRLHTGILEATFLLSPQAKPTMCITPCLHEVLKLGDHTVNKDDKVVSSMY 177

Query: 400 LAVYTLKALGKGTIYDKEDALKNLIQLL 483
           L     +  G+ +   + DA  + +  +
Sbjct: 178 LHPMNFEDGGRRSTRQQRDAHGDFVNFM 205


>10_07_0035 - 12173011-12173730
          Length = 239

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +1

Query: 163 KDVGTLYYAVRGLKQLKADVPNICEDLKTIKYDVKNLEQVFYLTNLA-LLTNCQNSLKPE 339
           KDV T   A+  + ++      + + LK      + LE +FY T L   LT  + ++   
Sbjct: 103 KDVATASDALGRMGKMMLQARRVLKTLKNYPDGEEGLEILFYNTLLGEALTRAREAIPAV 162

Query: 340 VLATPTQALDKKDVTIQELYLA 405
           + +      D  +V +  L LA
Sbjct: 163 ITSADLLVFDNGEVRLMALSLA 184


>08_01_0040 - 287030-287569,287981-288196,288269-288535
          Length = 340

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = +1

Query: 4   SLLVINTIKTYMKMYFRVQLLILVSIAVSNANILQGTVDINRLQTILKDNLKSKDVGTLY 183
           +LL I  I++Y +   +   L++  I    A  +   +D+  L +   +N+K + +  L 
Sbjct: 113 NLLTIKKIRSYSQTRQQEVRLVMAKIVEEAATHM--AIDLTELLSCYSNNMKPQMIAKLQ 170

Query: 184 YAVRGLKQLKADV 222
             VRG+     D+
Sbjct: 171 AEVRGVVSKGQDI 183


>05_01_0128 +
           866817-866859,867789-867874,868142-868231,868337-870214,
           870606-870795,870888-871483
          Length = 960

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 45  VLSSTIAHLSEYSSK*CQHSPRHCGYQSPSNHT 143
           VLSS  +H  E S+  C     HC ++    H+
Sbjct: 339 VLSSETSHFGEMSTNNCSRPQHHCMHRGRVTHS 371


>02_04_0432 + 22885880-22886168,22886755-22886801,22888496-22888939
          Length = 259

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 45  VLSSTIAHLSEYSSK*CQHSPRHCGYQSPS 134
           V S++ A+L+E   K    SP  C +Q+PS
Sbjct: 177 VASTSTAYLAEGKPKASSSSPSDCSFQTPS 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,524,683
Number of Sequences: 37544
Number of extensions: 233062
Number of successful extensions: 497
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)