Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327G12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 44 1e-05
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 37 0.002
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 34 0.015
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 32 0.045
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 28 0.73
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 28 0.97
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 2.2
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.0
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 3.9
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 26 3.9
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 25 5.2
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 5.2
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 5.2
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 6.8
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 9.0
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 25 9.0
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 44.0 bits (99), Expect = 1e-05
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 176 FACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIARHMERMHRD 340
F C C + + +L H+ EP CPYC + K+K + RH++R H D
Sbjct: 31 FPCDQCAKRFTRHENLTRHKACHSKAEP-IPCPYCEIKCKRKDLLKRHIQRFHND 84
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 36.7 bits (81), Expect = 0.002
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 158 RTPDPGFAC--PDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIARHMERM 331
R DP F C PDC + + K LR H++ F C +C + + RH+++M
Sbjct: 20 RLGDPRFYCTYPDCPKSFTRKEHLRRHERTH-ENVKAFSCSFCNRAFARSDVLNRHVQQM 78
Query: 332 H 334
H
Sbjct: 79 H 79
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 33.9 bits (74), Expect = 0.015
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 176 FACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIARHMERMH 334
F CP+C + +K LR H + E F C C R ++ ++ +H ER+H
Sbjct: 423 FVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQH-ERLH 473
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 161 TPDPGFACPDCGRLYKLKSSLRNHQKWECGKEPQFQC 271
T + F C CG+ + + +LR H++ P+ C
Sbjct: 447 TSEKPFVCI-CGKRFSRRDNLRQHERLHVNASPRLAC 482
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 32.3 bits (70), Expect = 0.045
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +2
Query: 176 FACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPY--CVYRAKQKMHIARHMERMHRDLHL 349
+ CP C R++ + H + G++P F+C Y C R ++ + RH+ R +
Sbjct: 4 YECPFCKRVFHRQEHQVRHIRSHTGEKP-FECSYPSCKKRFTRRDELIRHVRTHLRKALV 62
Query: 350 KPDQ 361
P+Q
Sbjct: 63 TPEQ 66
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 28.3 bits (60), Expect = 0.73
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 254 EPQFQCPYCVYRAKQKMHIARHMERMHRDLHL 349
+P CP C+ R K + +E ++ D H+
Sbjct: 263 DPNTTCPQCMARRKMQQKYLAQIEELYEDFHV 294
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 27.9 bits (59), Expect = 0.97
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 29 EQQGSTGGGEDVSFSRIGGLS 91
E+Q STG +D+S+S + LS
Sbjct: 128 EEQSSTGNNQDISYSSVNSLS 148
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Frame = +2
Query: 158 RTPDPGFA--CPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIAR----H 319
R P+ G C C Y K + +K + +F CP C YR + H R
Sbjct: 1177 RQPEAGMMIECELCHEWYHAKCMKMSKKKLRA--DEKFICPICDYRVEVPRHSHRPPLIE 1234
Query: 320 MERMHRDLHLKPDQYIK 370
+++M D+ P Q I+
Sbjct: 1235 LQKMVDDIPTLPFQPIE 1251
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +2
Query: 269 CPYCVYRAKQKMHIARHMERMHRDLHLKP---DQYIKQDNVDACT*PPIS-LGLCPDVIC 436
C C+ + + I+ +++ ++ ++K D I +V A PIS LG+ D+I
Sbjct: 63 CNLCILAVQGNIEISEEPQKLFQEENVKVYIYDSAISLSSVRASF--PISELGIRMDIIK 120
Query: 437 XRSVPRDD 460
R+ PR+D
Sbjct: 121 ARAEPRED 128
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 174 PGSGVRSPATPATPATSGNARRADHCSHDRPPMRLNDTSSP 52
P S + P TP+TPA S A+ + H RP + + SSP
Sbjct: 488 PSSTGQEPTTPSTPAKS--AQSSKHAR--RPSKQASAPSSP 524
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +2
Query: 182 CPDCGRLYKLK 214
CP+CG +YKLK
Sbjct: 143 CPECGSVYKLK 153
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 153 PATPATPATSGNARRADHCSHDRPPMRLNDTSSPPPVD 40
P+TP + T+G+ + + P ++ S+ PP+D
Sbjct: 48 PSTPLSTLTNGSTIQQSMTNQPEPTSQVPPISAKPPMD 85
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 156 SPATPATPATSGNARRADHCSHDRPPMRLNDTSSPPPVDP 37
S ATP + ++S N+ S DR P+ +PPP P
Sbjct: 456 SSATPQSESSSPNSVSPLLPSSDRLPLLRQSQFTPPPKKP 495
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 179 ACPDCGRLYKLKSSLRNHQKWECGKEP 259
+CPDC K+ + +KWE KEP
Sbjct: 78 SCPDC------KAQVEAFEKWEFSKEP 98
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.4 bits (53), Expect = 5.2
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 13/75 (17%)
Frame = -3
Query: 195 PQSGHANP--------GSGVRSPATPATPATSGNAR-----RADHCSHDRPPMRLNDTSS 55
PQ+GH P S SPA A PA+S + P + +N +S
Sbjct: 401 PQAGHPPPWAAASTSVSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSL 460
Query: 54 PPPVDPCCSRALSPS 10
PP P A+ PS
Sbjct: 461 PPWQQPTQQSAVQPS 475
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Frame = +2
Query: 158 RTPDPG--FACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAK----QKMHIARH 319
R P+ G C C Y K + +K ++ +F CP C YR +
Sbjct: 1102 RLPESGVMIECEICHEWYHAKCLKMSKKKLR--QDEKFTCPICDYRVEIPRLSNRPKLED 1159
Query: 320 MERMHRDLHLKPDQ 361
++ +++D+ L P Q
Sbjct: 1160 LQSLYKDVKLLPFQ 1173
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 240 HFWWLRNEDLSLYRRPQSGHANPGSGVRSPATP 142
+ W+ +ED + GH+ P S R+PA+P
Sbjct: 267 NLWFHASEDAKKFAEVY-GHSPPASPSRTPASP 298
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 463 YIISRYATXTDHIGTQTERDGGLGTSVHVVL 371
+++ RYA+ +H+ E D G+ VH +L
Sbjct: 565 FLMDRYASSHEHLQFLDENDIGIQLPVHELL 595
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 187 GLRPPVQAQVFVAQPPEVGVWQGASVP 267
GL PV+ + A PP G +GA P
Sbjct: 116 GLAGPVRGVGYTAPPPPAGFGRGAPPP 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,171
Number of Sequences: 5004
Number of extensions: 31974
Number of successful extensions: 124
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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