Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327G12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    37   1e-04
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    28   0.067
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    27   0.12 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    25   0.62 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.5  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    22   4.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   5.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   5.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   7.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   7.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   7.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   7.7  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +2

Query: 161 TPDPGFACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIARHMERMH 334
           T +  F CP+C + +     L+ H +   G++P + C +C  +  Q  ++ RH+ R+H
Sbjct: 5   TGEKPFECPECHKRFTRDHHLKTHMRLHTGEKP-YHCSHCDRQFVQVANLRRHL-RVH 60



 Score = 25.8 bits (54), Expect = 0.27
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 161 TPDPGFACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYC 280
           T +  + C  C R +   ++LR H +   G+ P + C  C
Sbjct: 33  TGEKPYHCSHCDRQFVQVANLRRHLRVHTGERP-YACELC 71


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 0.067
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +2

Query: 161 TPDPGFACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYC----VYRAKQKMH-IARHME 325
           T +  + C  CG+ +     L+ H +   G++P + C  C     Y    K+H +A + E
Sbjct: 199 TGEKPYVCKACGKGFTCSKQLKVHTRTHTGEKP-YTCDICGKSFGYNHVLKLHQVAHYGE 257

Query: 326 RMHR 337
           ++++
Sbjct: 258 KVYK 261


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +2

Query: 176 FACPDCGRLYKLKSSLRNH-QKWECGKEPQFQCPYC--VYRAKQKM--HIARHMERMHRD 340
           F C  CG++   K+SL+ H       ++ +++C  C  VY ++  +  HI  + +    D
Sbjct: 6   FTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSRPGD 65

Query: 341 LHLK 352
           + +K
Sbjct: 66  IDIK 69


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 167 DPGFACPDCGRLYKLKSSLRNHQ 235
           D  + C  C R Y+ K+SL  H+
Sbjct: 33  DTLYVCEFCNRRYRTKNSLTTHK 55



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 254 EPQFQCPYCVYRAKQKMHIARHMERMH 334
           EPQ +CPYC         + RH +  H
Sbjct: 4   EPQ-ECPYCRRNFSCYYSLKRHFQDKH 29


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 182 CPDCGRLYKLKSSLRNHQ 235
           C  C R+Y   +SLRNH+
Sbjct: 35  CNICKRVYSSLNSLRNHK 52


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 469 PRYIISRYATXTDHIGTQTERDGGL 395
           P Y+ S   T    +GT+  R GGL
Sbjct: 187 PYYLKSENNTELSRVGTKYHRSGGL 211


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -3

Query: 132 ATSGNARRADHCSHDRPPMRLNDTSSPP 49
           A S  +   DH     P   L D SSPP
Sbjct: 35  AESSASNSPDHYERFSPSTHLMDLSSPP 62


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 275 YCVYRAKQKMHIARHMERMHRDLHLKPDQYI 367
           +C+ +  + +H   H   +HRD  LKP+  +
Sbjct: 13  HCIQQILESVHHCHHNGVVHRD--LKPENLL 41


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 437 YRSHRDTNRARWGARYKRPRC 375
           Y+ +R+T++ R   R +R RC
Sbjct: 56  YQKYRETSKERSRDRTERERC 76


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 437 YRSHRDTNRARWGARYKRPRC 375
           Y+ +R+T++ R   R +R RC
Sbjct: 56  YQKYRETSKERSRDRTERERC 76


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 437 YRSHRDTNRARWGARYKRPRC 375
           Y+ +R+T++ R   R +R RC
Sbjct: 56  YQKYRETSKERSRDRTERERC 76


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 437 YRSHRDTNRARWGARYKRPRC 375
           Y+ +R+T++ R   R +R RC
Sbjct: 56  YQKYRETSKERSRDRTERERC 76


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 437 YRSHRDTNRARWGARYKRPRC 375
           Y+ +R+T++ R   R +R RC
Sbjct: 56  YQKYRETSKERSRDRTERERC 76


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 437 YRSHRDTNRARWGARYKRPRC 375
           Y+ +R+T++ R   R +R RC
Sbjct: 56  YQKYRETSKERSRDRTERERC 76


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 437 YRSHRDTNRARWGARYKRPRC 375
           Y+ +R+T++ R   R +R RC
Sbjct: 56  YQKYRETSKERSRDRTERERC 76


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 437 YRSHRDTNRARWGARYKRPR 378
           YR +R+T++ R+  R +R R
Sbjct: 289 YRKYRETSKERFRDRRERER 308


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +2

Query: 164 PDPGFACPDCGRLYKLKSSLRNHQK 238
           P   + C  CG+    K +L+ H++
Sbjct: 368 PGVCYTCDVCGKTLSTKLTLKRHKE 392


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 437 YRSHRDTNRARWGARYKRPR 378
           YR +R+T+R R   R +R R
Sbjct: 56  YREYRETSRERSRDRKERER 75


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 437 YRSHRDTNRARWGARYKRPR 378
           YR +R+T+R R   R +R R
Sbjct: 56  YREYRETSRERSRDRKERER 75


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 437 YRSHRDTNRARWGARYKRPR 378
           YR +R+T+R R   R +R R
Sbjct: 56  YREYRETSRERSRDRKERER 75


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 437 YRSHRDTNRARWGARYKRPR 378
           YR +R+T+R R   R +R R
Sbjct: 56  YREYRETSRERSRDRKERER 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,961
Number of Sequences: 438
Number of extensions: 2346
Number of successful extensions: 39
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)