Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327G10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   1.3  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   3.0  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    25   6.8  
SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...    25   9.0  

>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 291 LPTKKRKIGHSPIKTITSTTRGVYLVVNTLPYPSFIGLK 407
           +P K R    SP++T TS+++   +V ++ P P  I  K
Sbjct: 226 VPNKNRSSTFSPLRTPTSSSKTFVIVDHSTPSPPSIRTK 264


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 294 PTKKRKIGHSPIKTITSTTRGVYLVVN 374
           PT  R I HS + T  S T GV   VN
Sbjct: 261 PTNSRSISHSSLYTKQSGTAGVLPAVN 287


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 272 PIIGKIESYKEKMQYLCPICKNN 204
           P +   +     M+Y CP CKN+
Sbjct: 375 PPVSPFDESTSSMRYACPSCKNH 397


>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 266 IGKIESYKEKMQYLCPICKNNTNKR 192
           + KIE  ++  +Y CP C  NT KR
Sbjct: 26  VRKIE-VQQHSRYQCPFCGRNTVKR 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,281
Number of Sequences: 5004
Number of extensions: 33996
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)