Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327G10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019           33   0.18 
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220...    27   6.9  

>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
          Length = 508

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 309 KIGHSPIKTITSTTRGVYLVVNTLPYPSFIGLKKKFIFQQCF--RFRFVNLKYNKTSFLN 482
           +IG   I+ I  T   V+++   +PY  ++  K K+ F   +   F F N   N T+F+ 
Sbjct: 351 RIGRVKIQLIGFTMMTVFMLCLAIPYDQWLRHKNKYGFAVMYGLTFFFANFGPNTTTFII 410

Query: 483 DSQIF 497
            ++IF
Sbjct: 411 PAEIF 415


>04_03_0153 +
           11919769-11919880,11920190-11920488,11921909-11922024,
           11922113-11922248,11922959-11923006,11924130-11924228,
           11924317-11924385,11924465-11924599,11924687-11924755,
           11925221-11925276,11925465-11925624,11926534-11926698,
           11927484-11927568,11927646-11927849,11928396-11928487,
           11928571-11928613,11930727-11930884,11931520-11931630,
           11931947-11932012,11933716-11933784,11934181-11934255,
           11934330-11934506,11934598-11934683,11936259-11936313,
           11936901-11936939,11938105-11938230,11938319-11938432,
           11939208-11939265,11939485-11939623,11939698-11939783,
           11939842-11940041
          Length = 1148

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 294 PTKKRKIGHSPIKTITSTTRGVYLVVNTL 380
           P+  +   HSP+ +I S  RG YL+V  +
Sbjct: 122 PSSTQLARHSPVPSIASFDRGFYLLVKAI 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,185,797
Number of Sequences: 37544
Number of extensions: 171737
Number of successful extensions: 223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)