Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327G10f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY382900-1|AAR24369.1|  907|Homo sapiens 5'-3' exoribonuclease 2...    29   9.9  
AL158013-2|CAH71495.1|  950|Homo sapiens 5'-3' exoribonuclease 2...    29   9.9  
AL117332-2|CAI19756.1|  950|Homo sapiens 5'-3' exoribonuclease 2...    29   9.9  
AF152169-1|AAQ13577.1|  950|Homo sapiens DHP protein protein.          29   9.9  
AF064257-1|AAD55138.1|  950|Homo sapiens Dhm1-like protein protein.    29   9.9  

>AY382900-1|AAR24369.1|  907|Homo sapiens 5'-3' exoribonuclease 2
           isoform 3 protein.
          Length = 907

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -2

Query: 373 LTTRYTPLVVDVMVFIGEWPIFRFFVGNKLSXXIQ*LE-R*NHIKKRCNTYVQFV 212
           LT    P   DV   I +W    FFVGN     +  LE R N I +  N Y   V
Sbjct: 274 LTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVV 328


>AL158013-2|CAH71495.1|  950|Homo sapiens 5'-3' exoribonuclease 2
           protein.
          Length = 950

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -2

Query: 373 LTTRYTPLVVDVMVFIGEWPIFRFFVGNKLSXXIQ*LE-R*NHIKKRCNTYVQFV 212
           LT    P   DV   I +W    FFVGN     +  LE R N I +  N Y   V
Sbjct: 317 LTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVV 371


>AL117332-2|CAI19756.1|  950|Homo sapiens 5'-3' exoribonuclease 2
           protein.
          Length = 950

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -2

Query: 373 LTTRYTPLVVDVMVFIGEWPIFRFFVGNKLSXXIQ*LE-R*NHIKKRCNTYVQFV 212
           LT    P   DV   I +W    FFVGN     +  LE R N I +  N Y   V
Sbjct: 317 LTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVV 371


>AF152169-1|AAQ13577.1|  950|Homo sapiens DHP protein protein.
          Length = 950

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -2

Query: 373 LTTRYTPLVVDVMVFIGEWPIFRFFVGNKLSXXIQ*LE-R*NHIKKRCNTYVQFV 212
           LT    P   DV   I +W    FFVGN     +  LE R N I +  N Y   V
Sbjct: 317 LTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVV 371


>AF064257-1|AAD55138.1|  950|Homo sapiens Dhm1-like protein protein.
          Length = 950

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = -2

Query: 373 LTTRYTPLVVDVMVFIGEWPIFRFFVGNKLSXXIQ*LE-R*NHIKKRCNTYVQFV 212
           LT    P   DV   I +W    FFVGN     +  LE R N I +  N Y   V
Sbjct: 317 LTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVV 371


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,908,615
Number of Sequences: 237096
Number of extensions: 1065437
Number of successful extensions: 1368
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)