Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327G06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    28   0.97 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   1.3  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    25   5.2  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   5.2  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 351 FQAEFLLLGKHTKIMALDKELLIISKRFRVSSQNAKSMWGIQRDRYXFLN 500
           F A+FL  G    + ALD++L +++K+  V S +          R+ ++N
Sbjct: 631 FVADFLRTGDECTLAALDEDLQLLTKKTTVRSVSVVETERSSPPRFRYVN 680


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 43  EHRYYGESKPFGNKSLEKEYIGYL 114
           E +Y GES P G   L ++Y+ YL
Sbjct: 92  ERQYDGESSPKGYSDLIRDYVDYL 115


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 198 SFWRLVWWNVSCLYKDKVSPPSGRSYSRLSSHTH 299
           +FWR  W+    +    +  PSGR  S  ++H H
Sbjct: 106 AFWRGDWYVGKGVATASLQHPSGRIISLFNTHLH 139


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +1

Query: 145 DLINYLQKDEIKPRYPVI 198
           D ++++QKDE +P+ PV+
Sbjct: 687 DKLHFVQKDESRPKEPVV 704


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,869
Number of Sequences: 5004
Number of extensions: 45344
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)