Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327G04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18...    32   0.32 
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635...    28   4.0  
08_01_0409 + 3625071-3625228,3625829-3625905,3626310-3626889,362...    27   6.9  
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82...    27   9.1  

>08_01_0025 -
           184899-185384,185707-185940,187156-187341,188108-188158
          Length = 318

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 22/93 (23%), Positives = 47/93 (50%)
 Frame = -3

Query: 300 SLVFFV*ITLSVYLFIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIFYYVHILY 121
           +L+ F  I + V +F YFV   L H+  +  Y+  + +L  TI + +Y +  +++  +  
Sbjct: 34  TLLSFSLIAIPVAVFCYFVARHLIHM--FPAYNAGYAILAVTIVLSIYRNYRYFFCFVSS 91

Query: 120 SSRI**VLCVSIYYIMCFYVYDRIMKRTNKELM 22
           ++    +LC+ I + MC      +M R +  ++
Sbjct: 92  AA----ILCIYI-FSMCALHIKLLMNRDHHSVI 119


>08_02_1457 + 27260841-27260965,27261126-27261246,27263455-27263543,
            27263776-27263860,27263970-27264074,27264446-27264527,
            27264573-27264686,27265029-27265330,27265519-27266114,
            27266216-27266376,27266489-27266592,27266697-27266856,
            27266942-27267105,27267213-27267545,27267640-27267930,
            27268276-27268359,27268430-27268563,27268665-27268892,
            27268993-27269164,27269263-27269517,27269778-27270047
          Length = 1324

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -3

Query: 258  FIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIFYYVHILYSSRI 109
            F +F +Y +   L+Y+LY  + + L   I I   L  + +    ++S  I
Sbjct: 1182 FFWFALYMVLSFLYYTLYGMMTVALTPNIEIAAGLSFLIFIFWNVFSGFI 1231


>08_01_0409 +
           3625071-3625228,3625829-3625905,3626310-3626889,
           3626974-3627111,3627318-3627387,3627449-3627933,
           3628681-3628890,3629259-3629326,3629855-3629961,
           3630275-3630346,3630448-3630614,3630709-3630820,
           3631464-3631650,3632174-3632286
          Length = 847

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/48 (20%), Positives = 26/48 (54%)
 Frame = -3

Query: 270 SVYLFIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIFYYVHI 127
           ++Y+ +Y++   ++    Y++YS +FIV +  I +  ++     Y  +
Sbjct: 446 AIYIELYYIFASIWGHKIYTIYSILFIVFIILIIVTAFVTVALTYFQL 493


>10_01_0062 -
           818396-818538,819482-819693,819936-820420,820540-820696,
           820787-820924,821127-821703,821978-822018,822679-822809
          Length = 627

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/48 (18%), Positives = 26/48 (54%)
 Frame = -3

Query: 270 SVYLFIYFVIYRLFHLLFYSLYSQIFIVLLHTISI*VYLHAIFYYVHI 127
           ++Y+ +Y++   ++    Y++YS +FIV +  + +  ++     Y  +
Sbjct: 453 AIYIELYYIFASIWGHRIYTIYSILFIVFIILLIVTAFITVALTYFQL 500


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,738,277
Number of Sequences: 37544
Number of extensions: 95744
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)