Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327G02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...    85   5e-18
SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    25   5.2  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    25   5.2  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    25   9.0  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   9.0  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   9.0  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score = 85.4 bits (202), Expect = 5e-18
 Identities = 35/56 (62%), Positives = 49/56 (87%)
 Frame = +1

Query: 1   KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQV 168
           KF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V
Sbjct: 2   KFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITV 57


>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 88  SSPLSKELRQKFNVKSMPIRKDDEVQVSSLAK 183
           S  LSK LR       + IR+D  ++V S+ K
Sbjct: 38  SKALSKVLRHTAKANGLQIREDGYIEVDSILK 69


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 318 QTACLSHGIKLGSDYSASPLHSGHIV 395
           Q +C  + + LG+D +A+ LH G++V
Sbjct: 24  QPSCNVNSVYLGADPTAASLHVGNLV 49


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 252 RQQVYRCRAKDELKVFFYKSWAQTACLSHGIKLGSDYSASPLHSGHI 392
           + +V    A  +LK  FYK      CL+    LG D     L  G +
Sbjct: 26  KNKVVSFEAVGQLKKSFYKRQLPKQCLAFDSSLGKDVFLRALQEGRM 72


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 468 YWVHRYTTSNLNHEIHITYSKT*PKQYAPNVMVKQN 361
           YW   Y T+N N+E +I  ++    Q+  + MVK N
Sbjct: 113 YWQPEYETANTNNESYIYNTQISAAQFIID-MVKAN 147


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +3

Query: 390  IVWVKFYCRLCEFHDLSXMWYTYVPNNIFTGLHRQML 500
            IVW   Y  L   H LS  +  Y    +FTG+    L
Sbjct: 989  IVWWGLYRNLPSVHSLSLPFAVYALAFLFTGISSMSL 1025


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 305 VEENLQLILRATAVHLLSVNGLFFIILFRFHHKPNSIF 192
           V ++L L    T  HL+  N  F +     H++P +IF
Sbjct: 794 VSQHLSLRDEGTPNHLIKHNSYFLLPTVSRHYRPITIF 831


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,519
Number of Sequences: 5004
Number of extensions: 47217
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)