Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327G02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                           86   2e-17
12_01_0323 - 2459854-2460306                                           85   2e-17
11_01_0317 - 2365493-2365786,2365825-2365953                           62   3e-10
04_01_0155 - 1778644-1780059                                           29   3.0  
01_03_0199 - 13730219-13730681,13731039-13731232,13731280-13731516     27   9.1  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 41/56 (73%), Positives = 48/56 (85%)
 Frame = +1

Query: 1   KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQV 168
           K N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQV
Sbjct: 2   KRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQV 57


>12_01_0323 - 2459854-2460306
          Length = 150

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 41/56 (73%), Positives = 48/56 (85%)
 Frame = +1

Query: 1   KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQV 168
           K N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQV
Sbjct: 2   KRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQV 57


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 30/43 (69%), Positives = 35/43 (81%)
 Frame = +1

Query: 1   KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNV 129
           K N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV
Sbjct: 2   KRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNV 44


>04_01_0155 - 1778644-1780059
          Length = 471

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -3

Query: 264 TPAVCEWFILHHFISLSP*TEQYFCLIFS*RAHLNFIVFANRHGFYIEFLS*FLRQGRGH 85
           T A C W ++  + S        FCL+ S  A  +F+  A     Y+  L  F ++   H
Sbjct: 128 TDASCRWHVVRVYASAVLLMSMPFCLLMSLNALYSFLAVALVPPIYLVLLL-FAKEHHHH 186

Query: 84  QH 79
           +H
Sbjct: 187 RH 188


>01_03_0199 - 13730219-13730681,13731039-13731232,13731280-13731516
          Length = 297

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 366 QNNQSQVLYHGTGMLSAPRTCRRKPSTHPSRDSGT 262
           QN +    Y  +  L APR  R  PS+HP   S +
Sbjct: 155 QNLKKHKQYKPSLQLGAPRAPRAAPSSHPGASSSS 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,099,833
Number of Sequences: 37544
Number of extensions: 288990
Number of successful extensions: 585
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)