Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327G01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 55 4e-08
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 55 4e-08
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 51 4e-07
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 34 0.071
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 34 0.071
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 33 0.16
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 32 0.22
Z78412-3|CAB01651.2| 236|Caenorhabditis elegans Hypothetical pr... 29 2.0
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 29 2.7
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 29 2.7
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 29 2.7
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 29 2.7
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 29 2.7
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +2
Query: 407 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILG 514
KRIQKEL ++ DPP CSAGP GD+L+ W +TI+G
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMG 39
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +2
Query: 407 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILG 514
KRIQKEL ++ DPP CSAGP GD+L+ W +TI+G
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMG 39
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 51.2 bits (117), Expect = 4e-07
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = +2
Query: 407 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILG 514
KRIQKEL ++ DPP CS G GD+LY W +TI+G
Sbjct: 4 KRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMG 39
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 33.9 bits (74), Expect = 0.071
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 401 SAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGHQ 520
S +R+ ++ ++ DPP S P DN+ W + I G Q
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQ 44
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 33.9 bits (74), Expect = 0.071
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 401 SAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGHQ 520
S +R+ ++ ++ DPP S P DN+ W + I G Q
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQ 44
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 389 ALGTSAKRIQKELAEITLDPPPNCSAGPKGDNLYEW 496
A ++ +R+QK+ A++ DP A P DN+ EW
Sbjct: 16 ASSSAVRRLQKDYAKLMQDPVDGIKALPNEDNILEW 51
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 395 GTSAKRIQKELAEITLDPPPNCSAGP-KGDNLYEWVSTILG 514
G + KR+ E E+T PP A P DN +EW I G
Sbjct: 3 GYALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITG 43
>Z78412-3|CAB01651.2| 236|Caenorhabditis elegans Hypothetical
protein M176.4 protein.
Length = 236
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 500 TPIHTNYLLLVLHCSLVVGPM*FLPIPFESSWPM 399
T IHT +LL +L +LV+G + F+P+ + P+
Sbjct: 108 TKIHTKFLLGMLAWALVIGQLCFIPMLADHRGPL 141
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 315 LVEAEVQQTANQTRKRTNQTIXCQRLSAHRPRGFKRNWQKLHWTHHQTAVQDQ 473
+ + + QT Q ++RTN + ++ +P ++ N H H+Q Q+Q
Sbjct: 276 MTQNQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQ 328
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 315 LVEAEVQQTANQTRKRTNQTIXCQRLSAHRPRGFKRNWQKLHWTHHQTAVQDQ 473
+ + + QT Q ++RTN + ++ +P ++ N H H+Q Q+Q
Sbjct: 276 MTQNQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQ 328
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 407 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILG 514
+R+ KE E+ P A P DNL+EW TI G
Sbjct: 13 RRLMKEAMELR-QPTEMYHAQPMEDNLFEWHFTIRG 47
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 315 LVEAEVQQTANQTRKRTNQTIXCQRLSAHRPRGFKRNWQKLHWTHHQTAVQDQ 473
+ + + QT Q ++RTN + ++ +P ++ N H H+Q Q+Q
Sbjct: 276 MTQNQRNQTGPQNQQRTNDSRTMKQTPQQQPSQYQNNVGAAHQHHNQHGQQEQ 328
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 380 MSKALGTSA-KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILG 514
M+ + T A +R++K+ + +P P A P N+ EW I+G
Sbjct: 1 MTSGVSTVALQRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIG 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,201,252
Number of Sequences: 27780
Number of extensions: 254631
Number of successful extensions: 815
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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