Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327G01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.62 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 345 LPSVALLPRPVPLPDEPDA 289
           +PS+ LLPRP+     PD+
Sbjct: 648 MPSMPLLPRPISCHTTPDS 666


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 306 PDEPDAPDIILFND 265
           PD+   PDI+LFN+
Sbjct: 105 PDKVWKPDIVLFNN 118


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 144 REKLRSCLCWC 176
           R  + SC CWC
Sbjct: 5   RHVVMSCCCWC 15


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 101 RLNNYLIDKFTTHTIQINFT*SN*LLL 21
           ++ ++ +DK  T+  Q + T +N LLL
Sbjct: 450 KIESFTVDKLITYFEQFDTTINNGLLL 476


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 101 RLNNYLIDKFTTHTIQINFT*SN*LLL 21
           ++ ++ +DK  T+  Q + T +N LLL
Sbjct: 450 KIESFTVDKLITYFEQFDTTINNGLLL 476


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 181 HPHQHKQ 161
           HPHQH+Q
Sbjct: 20  HPHQHQQ 26


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 199 HLIVSRHPHQH 167
           H I+S+HP QH
Sbjct: 192 HGILSQHPQQH 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,038
Number of Sequences: 438
Number of extensions: 3834
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)