Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327F12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          27   0.15 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   0.82 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   3.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.7  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
 Frame = +1

Query: 40  CEICKTSMTCSEQMTMHLNGKRHLTKEKQHI-----LKMMKCGSENEKKQKAPVKQEKTE 204
           CE CK +    + M  ++  KRHL ++K  +     +  +  G EN      P      E
Sbjct: 6   CEKCKITANRQQVMRQNMKLKRHLAQDKVKVRVAEEVDPLPFGVEN-TISSVPQPPRSLE 64

Query: 205 KSNDETAADCIIVANKAIDVDT 270
            S D ++ D  + ++ +  + T
Sbjct: 65  GSYDSSSGDSPVSSHSSNGIHT 86


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 46  ICKTSMTCSEQMTMHLNGKRHLTKEKQH 129
           +C T   C + ++  L  KRH  KE+QH
Sbjct: 370 VCYTCDVCGKTLSTKLTLKRH--KEQQH 395


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 25  SPELYCEICKTSMTCSEQMTMH--LNGKRHLTKEKQHILKMMKCGSENEKKQK 177
           S E  C ICK   +    +  H  +  ++H   E+Q   K M+   E E++Q+
Sbjct: 30  SKEPICNICKRVYSSLNSLRNHKSIYHRQHSKNEQQR--KEMEQMREREREQR 80


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 154 SENEKKQKAPVKQEKTEKSNDETA 225
           S+N     +  +  KTE+ NDE A
Sbjct: 303 SQNSVSTGSDKENHKTEEPNDEVA 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.306    0.124    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,755
Number of Sequences: 438
Number of extensions: 1466
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.1 bits)