Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327F11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.62 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.62 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   5.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 467 RAPVRMMSTCVSTIRHFKRCTLTNGDPKII 378
           +AP   + + V T RH   C L++ DP ++
Sbjct: 299 KAPEETIISSVFTTRHNATCYLSHVDPDVV 328


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 467 RAPVRMMSTCVSTIRHFKRCTLTNGDPKII 378
           +AP   + + V T RH   C L++ DP ++
Sbjct: 5   KAPEETIISSVFTTRHNATCYLSHVDPDVV 34


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 453 SNWCPNIYFVSLKLDDVNKISFK 521
           S W P+ YF++ K+ ++  ++ K
Sbjct: 70  SLWQPDPYFLNAKVSEIAALNHK 92


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 399 C*CTSFEMSNSTYTCRHHSNWCPNIYFVSLKLDDVNKI 512
           C  TS   SN     + HS  CP      LK+  +N++
Sbjct: 365 CSQTSVHYSNG----QTHSQLCPTPRSTHLKVSGINRV 398


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,485
Number of Sequences: 438
Number of extensions: 2521
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)