Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327F02f
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0328 + 21035231-21036931                                         28   2.1  
02_04_0349 + 22222091-22222639,22222718-22223695                       27   6.5  
03_01_0031 + 292335-292844                                             26   8.6  

>01_05_0328 + 21035231-21036931
          Length = 566

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 196 RSWSYDWCGSGMVNCVG*VGTGVRRYIRSRS 104
           RSW+Y  C + M+  +    +G RRY   RS
Sbjct: 199 RSWAYGICSAAMLAAIAVFLSGTRRYRYKRS 229


>02_04_0349 + 22222091-22222639,22222718-22223695
          Length = 508

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 124 RYIRSRSYCWGDQCSRSTRVGGS 56
           R +R R+  W +  +R+TR+GGS
Sbjct: 467 RAMRKRAAEWSESAARATRLGGS 489


>03_01_0031 + 292335-292844
          Length = 169

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = -2

Query: 250 CGHIWS*SQHWSRRGCYIRSWSYD--WCG 170
           CG  WS  + W RR  + R W +   W G
Sbjct: 32  CGRRWSEWRRWRRRRGWRRRWGWQRRWIG 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,469,096
Number of Sequences: 37544
Number of extensions: 113267
Number of successful extensions: 205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)