Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327E10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 28 0.73
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 27 1.7
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 3.0
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 26 3.9
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 3.9
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 5.2
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.8
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 6.8
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 6.8
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 9.0
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 306 KNLDENLKQNQYQIQQENYRTFQRQKQLEAAQAKNQANNLPAPQ 437
++L +Q Q Q QQ+ + Q+Q+Q + Q + Q APQ
Sbjct: 251 RSLQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQ 294
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 294 TSDIKNLDENLKQNQYQIQQENY--RTFQRQKQLEAAQAKNQANNL 425
+S ++N L +Q ++Q + R ++QK +EA +A+ NNL
Sbjct: 287 SSSVQNSSRKLTSSQLTLRQSSLFDRVRKKQKAMEAKKAEEFKNNL 332
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 234 AAANIPDFSNKWPENQGPYFTS 299
A+ N+PDF+ +P P F S
Sbjct: 201 ASNNVPDFNQNYPTESNPMFLS 222
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 195 YSILVARYYRNGWIPWVKRWQIV 127
Y LVA+ R W WV R+QIV
Sbjct: 184 YYYLVAKGIRVPWKKWVTRFQIV 206
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 130 YLPPFDPRNPA-IP-VIPSNEYGIHNDVSVQGLPTQEQQPIFQTS 258
YL P A P V+P NE +H+D S + + P+ + S
Sbjct: 294 YLSSIQPNTAASFPKVVPKNEISVHHDSSSSNVSPIYKNPVAEQS 338
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 133 LPPFDPRNPAIPVIPSNEYGIHNDVSVQGLPTQEQQPIFQT 255
LPPF N + PSN I+ S Q P+ +P+ +
Sbjct: 248 LPPFPDTNSTLTYTPSNSQSIY---SSQSQPSPYSRPLLSS 285
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/62 (20%), Positives = 27/62 (43%)
Frame = +3
Query: 195 TQ*RVSPRSTYSGAAANIPDFSNKWPENQGPYFTSDIKNLDENLKQNQYQIQQENYRTFQ 374
+Q V+ TYS I +F ++W + P+ + + + + IQQ + +
Sbjct: 749 SQLMVANLDTYSLDCYEIHEFPSEWENDYAPFLLKEHHKVIGETYVSSFDIQQGCFNVIK 808
Query: 375 RQ 380
R+
Sbjct: 809 RR 810
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 139 PFDPRNPAIPVIPSNEYGIHNDVSVQGLPTQEQ 237
P P+ PA+PV+P E G N+ V LP ++
Sbjct: 677 PSVPQPPAVPVVP--EAGQLNEPVVPPLPPHDE 707
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +3
Query: 273 ENQGPYFTSDIKNLDENL----KQNQYQIQQENYRTFQRQKQLEAAQ-AKNQANNLPA 431
+NQ Y TS I NL+E + K+N + + R + EA + KN + +L A
Sbjct: 463 KNQNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRVTRSEMEEATEILKNNSADLKA 520
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 184 EYGIHNDVSVQGLPTQEQQPIFQTSPINGQRIK 282
EYG ++ + EQ+P+F S + G IK
Sbjct: 35 EYGPYSLTGILSSEKDEQEPLFDESIVLGYSIK 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,902
Number of Sequences: 5004
Number of extensions: 34267
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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