Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327E08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 131 7e-32
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 28 0.73
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 1.7
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 27 2.2
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 3.0
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 26 3.9
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 5.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.8
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 25 9.0
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 131 bits (316), Expect = 7e-32
Identities = 67/127 (52%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Frame = +1
Query: 142 MSALDQLKQHSTVV-ADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK 318
MS+L+QLK TVV +DTGDFE++ +YKP DATTNPSLIL+A+ QY ++D A+ Y K
Sbjct: 1 MSSLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAK 60
Query: 319 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFA 498
G SI Q+ D L + FG +IL I+PGRVS EVDAR SFD +I KA I L+
Sbjct: 61 AKGGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYE 120
Query: 499 EHGIKKE 519
GI +E
Sbjct: 121 AEGIGRE 127
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 0.73
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -1
Query: 509 IPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSME 330
+P S NK+ + F + +N S+ ++ I N S P +S + +SAT S+E
Sbjct: 150 VPRSLNKIHDPSRF--IKDNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIE 207
Query: 329 LPL 321
+P+
Sbjct: 208 IPI 210
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 518 SFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLS 366
S LIP +K +A +SL ++NLA+ + T IF+++ PK S
Sbjct: 159 SILIPTFVSKFNEFLALD--SSLRDNNLATVAVITTDKAIFSLNVPKKKRS 207
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 103 VSMSGEPD-TKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ 279
VS S PD TKR S L ++K + ++ K+ KP+ T+ + L+ A M
Sbjct: 141 VSQSFFPDVTKRLPCSCLSEIKNIDDLGLKQRILDSYKKQKPSGQLTSMQIELAKA-MFN 199
Query: 280 YQHI 291
YQ +
Sbjct: 200 YQDV 203
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 175 TVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAE 354
T +AD + + + D T L+L + G+E Y D A N S+EE + +
Sbjct: 273 TTIADYKEVAIQNKIEDDDTWTAQELVLLSEGVEMYSD--DWAKVASHVNTKSVEECILK 330
Query: 355 TLDMLS 372
L++ S
Sbjct: 331 FLNLPS 336
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -3
Query: 390 FTPKKHTQHIQSFSHLFFNGASIILSIFNS 301
FTPK + ++++ FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 404 IIFNISHPKSTLSISKVSATCSSMELPLSF 315
II N+ KS L+ KV A CS + LSF
Sbjct: 596 IIQNVEKLKSYLNSFKVQAECSEISKILSF 625
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 6.8
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +1
Query: 151 LDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGK---- 318
LDQLK H T+V GD + + +P A E + L KA++ G
Sbjct: 1979 LDQLKIHETLVHSLGDIHEKARKLLAEFSASP-----AGRFEWFDGYLLKAVEEGHWFVL 2033
Query: 319 DNGSSIEEQVAETLDML 369
DN + V + L+ L
Sbjct: 2034 DNANLCSPAVLDRLNSL 2050
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 127 TKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQH 288
+KR S LD K+ + G+ EA+ K TD+TT PS + +A Q ++
Sbjct: 2 SKRKSSSILDFFKKSNNGKNMWGN-EAVSVEK-TDSTTKPSTVKNAISSSQIKN 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,094
Number of Sequences: 5004
Number of extensions: 46697
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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