Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327E06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   182   4e-47
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   179   3e-46
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    93   2e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    73   2e-14
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    32   0.060
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    26   3.9  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   9.0  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  182 bits (442), Expect = 4e-47
 Identities = 82/105 (78%), Positives = 96/105 (91%)
 Frame = +3

Query: 207 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 386
           SG  +LL+ERL+++YGKKS L+F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDN
Sbjct: 151 SGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDN 210

Query: 387 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVD 521
           EA YDICRRNLDIERPTY NLNRLI Q+VSSITASLRF G+LNVD
Sbjct: 211 EACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVD 255


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  179 bits (435), Expect = 3e-46
 Identities = 80/105 (76%), Positives = 97/105 (92%)
 Frame = +3

Query: 207 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 386
           SGF +LL+ERL+++Y KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDN
Sbjct: 147 SGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDN 206

Query: 387 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVD 521
           E+ YDICRRNLDIERP+Y NLNRLI Q+VSSITASLRF+G+LNVD
Sbjct: 207 ESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVD 251


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 93.5 bits (222), Expect = 2e-20
 Identities = 42/105 (40%), Positives = 65/105 (61%)
 Frame = +3

Query: 207 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 386
           SG  +LL+ ++  +Y  +    F++ PAP+ S  VVEPYN+ L+ H  +E+SD  F +DN
Sbjct: 145 SGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDN 204

Query: 387 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVD 521
           EA+  I    L I+ P+Y +LN L+  +++ +T S RF G LN D
Sbjct: 205 EALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSD 249


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
 Frame = +3

Query: 207 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVD 383
           SG  S L+ERL+  Y KK    ++++P  Q VS  VV+PYNS+L       ++D   ++D
Sbjct: 147 SGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLD 206

Query: 384 NEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVD 521
           N A+  I    L  + PT+   N+L+  ++S+ T +LR+ G +N D
Sbjct: 207 NAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNND 252


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 31.9 bits (69), Expect = 0.060
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -1

Query: 518 HIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDG 390
           H  ++ + Q+SSD  ++ +D T  VG+G AL   I + D +DG
Sbjct: 176 HRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216


>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
 Frame = -1

Query: 509 SAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADV---IDGFIV-----DHESTVRVL 354
           +A ES R++   D  S    Q  +      E T A+    +DG ++     +HE    V+
Sbjct: 478 NAYESYRNTYTDDMDSSSIYQTSLSNVKTEETTPAEPASKVDGVVLYDFTGEHEG---VI 534

Query: 353 KGCVGGEDRVVGLDDGSGNLRRGVDG 276
               G E  ++  DDGSG +R  +DG
Sbjct: 535 TASEGQEFTLLEPDDGSGWVRVKIDG 560


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 521 VHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDGFIVDHE 372
           VH ++A E  R      N    + QVG    +N ++   D+ + F+ D+E
Sbjct: 609 VHHENAAEEIRKMRNLRNSRINSQQVGEKVFVNPDVKTMDIQETFLQDYE 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,837
Number of Sequences: 5004
Number of extensions: 29135
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)