Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327E04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   3.0  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   3.9  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    25   6.8  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    25   6.8  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   9.0  

>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 476 HVHSCRCHSHV 444
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 235 LQLAHSAPDLAKDTFSDAFASSVKDLLMVVTLAQL-IKTQLQLNEKLTLL 89
           LQL H     A++ F    ASS   L M   L  L + T+L  + KLT+L
Sbjct: 308 LQLLHDPQGFAEELFEKHLASSKSRLSMDQKLVVLRLLTRLVGSHKLTVL 357


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 232 QLAHSAPDLAKDTFSDAFASSVKDLL 155
           QL  +  DL KD FSD      KDLL
Sbjct: 30  QLKRNLADLEKDNFSDIRFEIPKDLL 55


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 5   IYEMFTAWYRIEARR*VFPY 64
           ++ +F  W R+E R  +FPY
Sbjct: 90  LFNVFLVWSRLEKRAALFPY 109


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 231 SSHIPHLTLPRTPS 190
           SSH PH++ PRT S
Sbjct: 136 SSHYPHISRPRTSS 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,690
Number of Sequences: 5004
Number of extensions: 21476
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)