Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327E04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23...    30   0.98 
07_03_0820 - 21749477-21749866,21751192-21751590                       29   3.0  
07_03_0459 - 18422034-18422351                                         27   9.1  

>05_01_0034 -
           228939-229028,229117-229230,229309-229430,229827-230056,
           230458-230537,230641-230859
          Length = 284

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 220 SAPDLAKDTFSDAFASSVKDLLMVVTLAQLIKTQLQLNEKL 98
           S P L+   F   F   ++D L +V L+ + +TQ+ + EKL
Sbjct: 237 SMPKLSPAAFDKLFNDRIQDNLALVYLSSITRTQISIAEKL 277


>07_03_0820 - 21749477-21749866,21751192-21751590
          Length = 262

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 246 AAPSCSSHIPHLTLPRTPSQMPSPP 172
           ++PS SS   H  LPR P+  P PP
Sbjct: 25  SSPSSSSSSTHSLLPRPPALWPPPP 49


>07_03_0459 - 18422034-18422351
          Length = 105

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 518 CLCTIRSAKWKARLHVHSC-RCHSHV 444
           CL    S +W+  + VHSC R H HV
Sbjct: 12  CLGRQPSRRWRGPVSVHSCSRSHPHV 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,274,300
Number of Sequences: 37544
Number of extensions: 157077
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)