Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327E04f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U94855-1|AAD03467.1| 357|Homo sapiens translation initiation fa... 54 4e-07
CR456959-1|CAG33240.1| 357|Homo sapiens EIF3S5 protein. 54 4e-07
BT006894-1|AAP35540.1| 357|Homo sapiens eukaryotic translation ... 54 4e-07
BC000490-1|AAH00490.1| 357|Homo sapiens eukaryotic translation ... 54 4e-07
AK095574-1|BAC04577.1| 350|Homo sapiens protein ( Homo sapiens ... 54 4e-07
AF354444-1|AAK18634.1| 348|Homo sapiens IFP38 protein. 42 0.002
>U94855-1|AAD03467.1| 357|Homo sapiens translation initiation
factor 3 47 kDa subunit protein.
Length = 357
Score = 53.6 bits (123), Expect = 4e-07
Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 1/145 (0%)
Frame = -2
Query: 520 YVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKTXXXXXXXXXXXXXXSDLAQV 341
YV +GVP G MFTP+ V Y+ E +G+ + KT DL QV
Sbjct: 216 YVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSS---DLQQV 272
Query: 340 MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-LLQLAHSAPDLAKDTFSDAFASSVK 164
L+ L + P + D F S++
Sbjct: 273 GGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNIN 332
Query: 163 DLLMVVTLAQLIKTQLQLNEKLTLL 89
DLLMV LA L ++Q+ LNEKL L
Sbjct: 333 DLLMVTYLANLTQSQIALNEKLVNL 357
>CR456959-1|CAG33240.1| 357|Homo sapiens EIF3S5 protein.
Length = 357
Score = 53.6 bits (123), Expect = 4e-07
Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 1/145 (0%)
Frame = -2
Query: 520 YVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKTXXXXXXXXXXXXXXSDLAQV 341
YV +GVP G MFTP+ V Y+ E +G+ + KT DL QV
Sbjct: 216 YVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSS---DLQQV 272
Query: 340 MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-LLQLAHSAPDLAKDTFSDAFASSVK 164
L+ L + P + D F S++
Sbjct: 273 GGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNIN 332
Query: 163 DLLMVVTLAQLIKTQLQLNEKLTLL 89
DLLMV LA L ++Q+ LNEKL L
Sbjct: 333 DLLMVTYLANLTQSQIALNEKLVNL 357
>BT006894-1|AAP35540.1| 357|Homo sapiens eukaryotic translation
initiation factor 3, subunit 5 epsilon, 47kDa protein.
Length = 357
Score = 53.6 bits (123), Expect = 4e-07
Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 1/145 (0%)
Frame = -2
Query: 520 YVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKTXXXXXXXXXXXXXXSDLAQV 341
YV +GVP G MFTP+ V Y+ E +G+ + KT DL QV
Sbjct: 216 YVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSS---DLQQV 272
Query: 340 MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-LLQLAHSAPDLAKDTFSDAFASSVK 164
L+ L + P + D F S++
Sbjct: 273 GGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNIN 332
Query: 163 DLLMVVTLAQLIKTQLQLNEKLTLL 89
DLLMV LA L ++Q+ LNEKL L
Sbjct: 333 DLLMVTYLANLTQSQIALNEKLVNL 357
>BC000490-1|AAH00490.1| 357|Homo sapiens eukaryotic translation
initiation factor 3, subunit 5 epsilon, 47kDa protein.
Length = 357
Score = 53.6 bits (123), Expect = 4e-07
Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 1/145 (0%)
Frame = -2
Query: 520 YVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKTXXXXXXXXXXXXXXSDLAQV 341
YV +GVP G MFTP+ V Y+ E +G+ + KT DL QV
Sbjct: 216 YVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSS---DLQQV 272
Query: 340 MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-LLQLAHSAPDLAKDTFSDAFASSVK 164
L+ L + P + D F S++
Sbjct: 273 GGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNIN 332
Query: 163 DLLMVVTLAQLIKTQLQLNEKLTLL 89
DLLMV LA L ++Q+ LNEKL L
Sbjct: 333 DLLMVTYLANLTQSQIALNEKLVNL 357
>AK095574-1|BAC04577.1| 350|Homo sapiens protein ( Homo sapiens
cDNA FLJ38255 fis, clone FCBBF3001020, highly similar to
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 5. ).
Length = 350
Score = 53.6 bits (123), Expect = 4e-07
Identities = 41/145 (28%), Positives = 55/145 (37%), Gaps = 1/145 (0%)
Frame = -2
Query: 520 YVCVPLGVPNGKQGCMFTPVDVTLTCYEPEIVGLQVCQKTXXXXXXXXXXXXXXSDLAQV 341
YV +GVP G MFTP+ V Y+ E +G+ + KT DL QV
Sbjct: 209 YVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSS---DLQQV 265
Query: 340 MXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-LLQLAHSAPDLAKDTFSDAFASSVK 164
L+ L + P + D F S++
Sbjct: 266 GGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNIN 325
Query: 163 DLLMVVTLAQLIKTQLQLNEKLTLL 89
DLLMV LA L ++Q+ LNEKL L
Sbjct: 326 DLLMVTYLANLTQSQIALNEKLVNL 350
>AF354444-1|AAK18634.1| 348|Homo sapiens IFP38 protein.
Length = 348
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = -2
Query: 238 LLQLAHSAPDLAKDTFSDAFASSVKDLLMVVTLAQLIKTQLQLNEK 101
L+ L + P + D F S++ DLLMV LA L ++Q+ LNEK
Sbjct: 299 LMSLVNQVPKIVPDDFETMLHSNINDLLMVAYLANLTQSQIALNEK 344
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,808,058
Number of Sequences: 237096
Number of extensions: 928235
Number of successful extensions: 2402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2400
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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