Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327E02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0935 - 12517564-12517650,12517995-12518060,12518156-125181... 139 1e-33
05_04_0301 + 19983073-19983196,19984508-19985105,19985190-199854... 34 0.080
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552 30 1.3
10_01_0206 - 2206359-2209142 28 4.0
01_03_0280 - 14546334-14546815,14546894-14547560,14550333-145517... 28 4.0
10_02_0199 + 6668902-6669293,6669825-6669882 28 5.2
07_01_0130 - 963856-965454 28 5.2
01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692 28 5.2
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247... 27 6.9
01_06_1448 - 37434159-37434242,37434875-37434968,37435077-374352... 27 9.1
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262... 27 9.1
>03_02_0935 -
12517564-12517650,12517995-12518060,12518156-12518185,
12518279-12518377,12518578-12518673,12519221-12519271,
12519358-12519424,12519516-12519610,12519928-12520009,
12520609-12520658,12520741-12520791,12521749-12521832,
12521918-12522028,12522276-12522425,12522858-12522975,
12523118-12523290
Length = 469
Score = 139 bits (336), Expect = 1e-33
Identities = 66/100 (66%), Positives = 79/100 (79%)
Frame = +2
Query: 179 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 358
R+E+DTFG + VP+DKL+GAQT RS+ NF IGG ERMP P+I AFG+LKK AAKVN+EY
Sbjct: 43 REERDTFGPIRVPNDKLWGAQTQRSLQNFDIGGERERMPVPIIRAFGVLKKCAAKVNMEY 102
Query: 359 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQ 478
GL+ I AIMQA +V G+L + HFPLVIWQTGSGTQ
Sbjct: 103 GLDPTIGKAIMQAAQEVAEGQL--DDHFPLVIWQTGSGTQ 140
>05_04_0301 +
19983073-19983196,19984508-19985105,19985190-19985442,
19985947-19985979
Length = 335
Score = 33.9 bits (74), Expect = 0.080
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +2
Query: 323 LKKAAAKVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQXQHEHERG 502
L+ AA +V YGLE +AD+++ I K E P++ Q ++EHE
Sbjct: 71 LRCAAHRVAQHYGLETTVADSLVDGSVSKIVAKKTSESKLPVIALSEVPSKQARNEHEAA 130
Query: 503 D 505
+
Sbjct: 131 E 131
>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
Length = 471
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 143 NKRNISTTSVTARKEKDTFGELDVPDDKLYGAQTV 247
N IST+S A+K+ ELDVPD+ G +
Sbjct: 352 NDGRISTSSTDAQKDSTHVDELDVPDNNAKGKSLI 386
>10_01_0206 - 2206359-2209142
Length = 927
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -3
Query: 159 EILRLFIRRKTHL*FLDVLIKDEENLNMDVAIIYNFSSDR*LKT 28
EILR F+ K +L LD + E ++M A+ NF R L T
Sbjct: 271 EILRRFLEEKKYLIVLDDVWTPEVIIDMSRALAQNFKGSRLLIT 314
>01_03_0280 -
14546334-14546815,14546894-14547560,14550333-14551754,
14552831-14553127
Length = 955
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 293 ACVPQFHRSGSSSPNARSARHIACHLARPAP 201
A P+ HR G ++P R RH A P P
Sbjct: 10 AATPRRHRHGPATPRRRRRRHAAAVATPPPP 40
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 421 ALPRGSLPPRHLADWLR 471
A PR LPP HL WL+
Sbjct: 118 ATPRPGLPPHHLPSWLK 134
>07_01_0130 - 963856-965454
Length = 532
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 341 KVNIEYGLEKKIADAIMQACDDVISGKLYREGHFPLVIWQT 463
+V + + ++K+ MQ DV+SG++ +G F +V+W++
Sbjct: 457 RVGVAHEEDQKVPKIDMQ---DVLSGRVAPDGRFDVVLWRS 494
>01_06_0217 - 27624588-27625817,27626203-27626484,27626582-27626692
Length = 540
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 341 WRLLSLVYRKRQSRDKACVPQFHRSGSSSPNARSARHIA 225
WR LV + +Q + PQ + +SSP A+SA +A
Sbjct: 307 WRTQPLVVQPQQYNIQQVPPQLVQQQTSSPQAQSAPQVA 345
>05_04_0312 -
20123892-20124085,20124183-20124508,20124728-20124732,
20125063-20125670,20125744-20125884,20126067-20126194,
20126288-20126329,20126613-20126755
Length = 528
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 292 ALSRDCRFRYTKESSRQSQYRIWT*KENCRR 384
A S+DC Y SSRQS +W E R
Sbjct: 61 ARSKDCDMEYDDSSSRQSGEPLWEHAEGVER 91
>01_06_1448 -
37434159-37434242,37434875-37434968,37435077-37435250,
37435536-37435627,37435947-37436056,37437274-37437349,
37437445-37437537,37437617-37437817
Length = 307
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 202 GAGRAR*QAIWRADRAFGDELPDRWN*GTHALSRDCRFRYTKESS 336
G R R +WR A G + WN +S DC YT + +
Sbjct: 12 GKSRVRVSRVWRRPAAAGGHVIVEWNVAVSVVS-DCLPSYTSDDN 55
>01_05_0705 +
24424457-24424948,24425520-24425624,24426097-24426207,
24426675-24426857,24427066-24427192,24427336-24427397,
24427638-24427724,24428703-24428789,24429210-24429323,
24429507-24429635,24429834-24429896,24430333-24430494,
24430611-24430729,24430786-24431794
Length = 949
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 293 PYPVIVAFGILKKAAAKVNIEYGLEKKIADAIM 391
PYPV+ + + K+A A+ GL K DA +
Sbjct: 69 PYPVVSVWVLDKRALAEARARAGLTKAAEDAFL 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,204,632
Number of Sequences: 37544
Number of extensions: 290111
Number of successful extensions: 727
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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