Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327E02f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U59309-1|AAB66354.1|  510|Homo sapiens fumarase precursor protein.    148   1e-35
U48857-1|AAD00071.1|  510|Homo sapiens fumarase protein.              148   1e-35
M15502-1|AAA52483.1|  468|Homo sapiens FH protein.                    148   1e-35
BT009839-1|AAP88841.1|  510|Homo sapiens fumarate hydratase prot...   148   1e-35
BC017444-1|AAH17444.1|  510|Homo sapiens fumarate hydratase prot...   148   1e-35
BC003108-1|AAH03108.1|  510|Homo sapiens fumarate hydratase prot...   148   1e-35
AL606476-1|CAI14951.1|  510|Homo sapiens fumarate hydratase prot...   148   1e-35
AL591898-5|CAI13908.1|  510|Homo sapiens fumarate hydratase prot...   148   1e-35
AL359764-5|CAI15144.1|  510|Homo sapiens fumarate hydratase prot...   148   1e-35
BC049202-1|AAH49202.2|  508|Homo sapiens POLM protein protein.         29   9.9  

>U59309-1|AAB66354.1|  510|Homo sapiens fumarase precursor protein.
          Length = 510

 Score =  148 bits (359), Expect = 1e-35
 Identities = 72/100 (72%), Positives = 82/100 (82%)
 Frame = +2

Query: 179 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 358
           R E DTFGEL VP+DK YGAQTVRS MNF IGG+ ERMP PVI AFGILK+AAA+VN +Y
Sbjct: 51  RIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDY 110

Query: 359 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQ 478
           GL+ KIA+AIM+A D+V  GKL    HFPLV+WQTGSGTQ
Sbjct: 111 GLDPKIANAIMKAADEVAEGKL--NDHFPLVVWQTGSGTQ 148


>U48857-1|AAD00071.1|  510|Homo sapiens fumarase protein.
          Length = 510

 Score =  148 bits (359), Expect = 1e-35
 Identities = 72/100 (72%), Positives = 82/100 (82%)
 Frame = +2

Query: 179 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 358
           R E DTFGEL VP+DK YGAQTVRS MNF IGG+ ERMP PVI AFGILK+AAA+VN +Y
Sbjct: 51  RIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDY 110

Query: 359 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQ 478
           GL+ KIA+AIM+A D+V  GKL    HFPLV+WQTGSGTQ
Sbjct: 111 GLDPKIANAIMKAADEVAEGKL--NDHFPLVVWQTGSGTQ 148


>M15502-1|AAA52483.1|  468|Homo sapiens FH protein.
          Length = 468

 Score =  148 bits (359), Expect = 1e-35
 Identities = 72/100 (72%), Positives = 82/100 (82%)
 Frame = +2

Query: 179 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 358
           R E DTFGEL VP+DK YGAQTVRS MNF IGG+ ERMP PVI AFGILK+AAA+VN +Y
Sbjct: 8   RIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDY 67

Query: 359 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQ 478
           GL+ KIA+AIM+A D+V  GKL    HFPLV+WQTGSGTQ
Sbjct: 68  GLDPKIANAIMKAADEVAEGKL--NDHFPLVVWQTGSGTQ 105


>BT009839-1|AAP88841.1|  510|Homo sapiens fumarate hydratase
           protein.
          Length = 510

 Score =  148 bits (359), Expect = 1e-35
 Identities = 72/100 (72%), Positives = 82/100 (82%)
 Frame = +2

Query: 179 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 358
           R E DTFGEL VP+DK YGAQTVRS MNF IGG+ ERMP PVI AFGILK+AAA+VN +Y
Sbjct: 51  RIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDY 110

Query: 359 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQ 478
           GL+ KIA+AIM+A D+V  GKL    HFPLV+WQTGSGTQ
Sbjct: 111 GLDPKIANAIMKAADEVAEGKL--NDHFPLVVWQTGSGTQ 148


>BC017444-1|AAH17444.1|  510|Homo sapiens fumarate hydratase
           protein.
          Length = 510

 Score =  148 bits (359), Expect = 1e-35
 Identities = 72/100 (72%), Positives = 82/100 (82%)
 Frame = +2

Query: 179 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 358
           R E DTFGEL VP+DK YGAQTVRS MNF IGG+ ERMP PVI AFGILK+AAA+VN +Y
Sbjct: 51  RIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDY 110

Query: 359 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQ 478
           GL+ KIA+AIM+A D+V  GKL    HFPLV+WQTGSGTQ
Sbjct: 111 GLDPKIANAIMKAADEVAEGKL--NDHFPLVVWQTGSGTQ 148


>BC003108-1|AAH03108.1|  510|Homo sapiens fumarate hydratase
           protein.
          Length = 510

 Score =  148 bits (359), Expect = 1e-35
 Identities = 72/100 (72%), Positives = 82/100 (82%)
 Frame = +2

Query: 179 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 358
           R E DTFGEL VP+DK YGAQTVRS MNF IGG+ ERMP PVI AFGILK+AAA+VN +Y
Sbjct: 51  RIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDY 110

Query: 359 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQ 478
           GL+ KIA+AIM+A D+V  GKL    HFPLV+WQTGSGTQ
Sbjct: 111 GLDPKIANAIMKAADEVAEGKL--NDHFPLVVWQTGSGTQ 148


>AL606476-1|CAI14951.1|  510|Homo sapiens fumarate hydratase
           protein.
          Length = 510

 Score =  148 bits (359), Expect = 1e-35
 Identities = 72/100 (72%), Positives = 82/100 (82%)
 Frame = +2

Query: 179 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 358
           R E DTFGEL VP+DK YGAQTVRS MNF IGG+ ERMP PVI AFGILK+AAA+VN +Y
Sbjct: 51  RIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDY 110

Query: 359 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQ 478
           GL+ KIA+AIM+A D+V  GKL    HFPLV+WQTGSGTQ
Sbjct: 111 GLDPKIANAIMKAADEVAEGKL--NDHFPLVVWQTGSGTQ 148


>AL591898-5|CAI13908.1|  510|Homo sapiens fumarate hydratase
           protein.
          Length = 510

 Score =  148 bits (359), Expect = 1e-35
 Identities = 72/100 (72%), Positives = 82/100 (82%)
 Frame = +2

Query: 179 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 358
           R E DTFGEL VP+DK YGAQTVRS MNF IGG+ ERMP PVI AFGILK+AAA+VN +Y
Sbjct: 51  RIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDY 110

Query: 359 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQ 478
           GL+ KIA+AIM+A D+V  GKL    HFPLV+WQTGSGTQ
Sbjct: 111 GLDPKIANAIMKAADEVAEGKL--NDHFPLVVWQTGSGTQ 148


>AL359764-5|CAI15144.1|  510|Homo sapiens fumarate hydratase
           protein.
          Length = 510

 Score =  148 bits (359), Expect = 1e-35
 Identities = 72/100 (72%), Positives = 82/100 (82%)
 Frame = +2

Query: 179 RKEKDTFGELDVPDDKLYGAQTVRSVMNFPIGGIEERMPYPVIVAFGILKKAAAKVNIEY 358
           R E DTFGEL VP+DK YGAQTVRS MNF IGG+ ERMP PVI AFGILK+AAA+VN +Y
Sbjct: 51  RIEYDTFGELKVPNDKYYGAQTVRSTMNFKIGGVTERMPTPVIKAFGILKRAAAEVNQDY 110

Query: 359 GLEKKIADAIMQACDDVISGKLYREGHFPLVIWQTGSGTQ 478
           GL+ KIA+AIM+A D+V  GKL    HFPLV+WQTGSGTQ
Sbjct: 111 GLDPKIANAIMKAADEVAEGKL--NDHFPLVVWQTGSGTQ 148


>BC049202-1|AAH49202.2|  508|Homo sapiens POLM protein protein.
          Length = 508

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 332 LSLVYRKRQSRDKACVPQFHRSGSSSPN 249
           LS   + R++ + ACVP FH    ++PN
Sbjct: 422 LSTFLQSRETPEPACVPHFHSGNWAAPN 449


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,319,951
Number of Sequences: 237096
Number of extensions: 1444725
Number of successful extensions: 3803
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3794
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)