Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327D09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 64 2e-11
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 3.0
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 26 3.9
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 3.9
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 3.9
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 6.8
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 6.8
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c... 25 6.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 6.8
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 9.0
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 9.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 9.0
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 63.7 bits (148), Expect = 2e-11
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Frame = +3
Query: 39 MLDLFSIFSKGGIVLWCFQSTSEIFSPSVNALIRSVILQE-RSGNNTFNHNALTLXYKLD 215
M+DLF+I +KGGIVLW ++ S + + L L E R+ NNT + T+ Y+
Sbjct: 1 MIDLFAIVNKGGIVLWK-KTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDRYTMQYQEA 59
Query: 216 NEFELVFVVAYQRILQLSYVDKFLNDVHLEFRDKYKNELQ 335
++ +VFVV +Q + ++Y LN H F + +K +L+
Sbjct: 60 TQYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLE 99
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 409 AHISHSFSTLSKVVLKLKSTI 347
AHI H STLS +LKL I
Sbjct: 65 AHIDHGKSTLSDCILKLTGVI 85
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 437 LFGNFSL*LCPYFTFLQHFIKGSFKIKINDTGTCLELILVLVPELQ 300
L NFS+ + +QH +K + C+E IL P +Q
Sbjct: 248 LHANFSVSISLRNKAIQHLLKSKIAANTDKAINCIEFILEAPPSMQ 293
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 381 KVLKECEIWAKSQAKIPKQMRTFEDSQK 464
K+LK C+IW K+ P+++ + K
Sbjct: 121 KILKLCDIWEKASTFPPEKLESLRSKLK 148
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = -2
Query: 355 STIQGPVWSSFLYLSLNSKWTSLRNLSTYDNWSMRWYATTKT 230
++I ++SS++Y ++ S ++ LS ++W + +A +T
Sbjct: 424 NSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYET 465
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 135 IRSVILQERSGNNTFNHNALTLXYKLDNEFELVFVVA 245
+RS I+ R+GN+ +AL + + FEL + ++
Sbjct: 26 LRSYIIYSRNGNSLNQEDALIIEKAIKRAFELEWQIS 62
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -2
Query: 472 FLDFWESSKVLICLGILACDFAHI----SHSFSTLSKVVLKLKSTIQGPVWSSFLYLS 311
F FW V++ LG L C+ A + + S + L +L L + P + +F LS
Sbjct: 1328 FHSFWNMFDVVVTLGSLTCNIAILAKFENRSLTLLQTTLLVLVTVHLIPKFDNFDQLS 1385
>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 313
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 243 AYQRILQL--SYV-DKFLNDVHLEFRDKYKNELQTGPCIVD 356
A QR+L L SY+ + L ++ LEFR ++K+ CI+D
Sbjct: 251 ACQRVLGLIKSYMRPRTLEELKLEFRFEHKSVQDITTCILD 291
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -2
Query: 496 RSIIDATVFLDFWESSKVLICLGILACDFAHISHSFSTLSKVVLKLKSTIQGPVWSSFLY 317
RSI ++TV+L++ +S VL + HI +T+SK +L S Q ++ ++
Sbjct: 113 RSIYNSTVYLEYLLNSSVLEVIDSTLALLLHIVQK-ATISKRGKQLFSLSQDRLFRFLMF 171
Query: 316 L 314
L
Sbjct: 172 L 172
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +3
Query: 255 ILQLSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFDKVLKECEIW 407
++ ++ VD+ L ++ + + Y+N + V+ T +DKVL +C+++
Sbjct: 154 VVVVNKVDRALLELQISQEELYQNFARVVES-VNVVISTYYDKVLGDCQVF 203
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +3
Query: 366 KTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKKTVASMIERXGDEKGKK 521
KT D + + + + RT+E Q++K+ +ER EK K+
Sbjct: 215 KTALDDLYNQRRALQREYDTQLRAFRTYEREQRAKRQEQFRLERENREKEKR 266
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +3
Query: 255 ILQLSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFDKVLKECEIW 407
++ ++ VD+ L ++ + + Y+N + V+ T +DKVL +C+++
Sbjct: 154 VVVVNKVDRALLELQISQEELYQNFARVVES-VNVVISTYYDKVLGDCQVF 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,235
Number of Sequences: 5004
Number of extensions: 42072
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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