Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327D09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 75 3e-14
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 30 0.98
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 29 2.3
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 29 3.0
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797... 28 4.0
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 28 4.0
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 28 4.0
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717 27 6.9
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 27 9.1
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 75.4 bits (177), Expect = 3e-14
Identities = 49/164 (29%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Frame = +3
Query: 33 IKMLDLFSIFSKGGIVLW--CFQSTSEIFSPS-VNALIRSVILQERSGNNTFNHNALTLX 203
++ML+ IF++GG++LW C S ++ALIRS +L+ERS + +F+ + L
Sbjct: 425 VEMLEELLIFTRGGLILWSSCRALGGAALKGSPIDALIRSCLLEERSADASFSQDTYALK 484
Query: 204 YKLDNEFELVFVVAYQRILQLSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFDK 383
+ +N+ LVFV YQR+L L YVD L V EF Y + ++ F++
Sbjct: 485 WTFNNDLGLVFVAVYQRMLHLLYVDDLLAAVRKEFSQIYDPKRT--------SYDDAFNE 536
Query: 384 VLKECEIWAKSQAKIPKQMRTFEDSQKSKKTVASMIERXGDEKG 515
V ++ + A+++++ K+ + S+ +K T + GD +G
Sbjct: 537 VFRQLHLEAEARSEEMKKNKQVTGSRPTKVTTKT---NRGDTQG 577
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 30.3 bits (65), Expect = 0.98
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +3
Query: 312 DKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKK 473
DK K+EL G I+D+ + T+DK L E W KS +PK + S K K
Sbjct: 1434 DKEKHELVFG--IIDYLRQYTWDKQL---ETWVKSSLVVPKNVSPTVVSPKEYK 1482
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 312 DKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKS 467
DK K EL G I+D+ + T+DK L E W K+ +PK + S K+
Sbjct: 1562 DKQKKELVFG--IIDYLRQYTWDKQL---ESWVKTSLFVPKNLSPTVSSPKT 1608
>09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +3
Query: 312 DKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQMRTFEDSQKSKK 473
DK K EL G I+D+ + T+DK L E W K+ +PK + S K K
Sbjct: 1459 DKQKKELVFG--IIDYLRQYTWDKQL---ESWVKTSLFVPKNLSPTVISPKEYK 1507
>05_06_0020 +
24976990-24977167,24978763-24978874,24979634-24979722,
24979801-24979869,24979953-24980082,24980506-24980664,
24980767-24981127,24981343-24981452,24981753-24981909,
24983336-24983748,24983828-24984020,24984384-24986198
Length = 1261
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 411 KSQAKIPKQMRTFEDSQKSKKTVASMIERXGDE 509
K QAK K R +D ++ +K A ++ER DE
Sbjct: 453 KKQAKQKKNNRKIKDKERDEKFEAKILERLHDE 485
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +3
Query: 273 VDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTT-----FDKVLKECEIWAKSQAKIPKQ 437
VDK +ND E + K +N + + D N K T + + LKE E ++Q K+
Sbjct: 395 VDKAVNDKSKEIQQKIENAMLEKKKLADMNEKLTKNQDIWRRTLKEIEERERAQLKLKDD 454
Query: 438 -MRTFEDSQKSKK 473
+R E+ K K
Sbjct: 455 TIRDLEEQIKDFK 467
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 261 QLSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFDKVLKECEIWAKSQAKIPKQM 440
+L +K LNDV + + + ++ N K D KE E K + + KQ+
Sbjct: 1420 ELDAREKKLNDVEASLKSEIDRHRK-----ININIKRKLDASAKEKEELTKEKQSLSKQL 1474
Query: 441 RTFEDSQKS 467
+ SQK+
Sbjct: 1475 EDLKSSQKT 1483
>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
Length = 415
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 457 ESSKVLICLGILACDFAHISHSFSTLSKVVLKLKSTIQGPVWSSFLY 317
E KV + ++A FA +S + T ++K + TIQ V+ +FL+
Sbjct: 222 EQKKVPLPPSLVAGAFAGVSSTLCTYPLELIKTRLTIQRGVYDNFLH 268
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 234 FVVAYQRILQLSYVDKFLNDVHLEFRDKYKNELQTGPCIVDFNFKTTFD-KVLKEC 398
FV Q +L LS +D +D L + L +VD + KT+F+ + L++C
Sbjct: 27 FVQFEQHLLCLSLLDDHGSDRRLNLQQSLLESLVLLRHVVDLDLKTSFEPRFLQDC 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,672,623
Number of Sequences: 37544
Number of extensions: 230802
Number of successful extensions: 506
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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