Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327D08f
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 284 TTTTPEVIATAIRTLAKGLAPLRRLIFLIYFYSTLF 177
           TT TP+ IA  I   ++ + P+  +IF I ++S ++
Sbjct: 433 TTMTPQEIAQWIDRRSRIVFPVAFIIFNILYWSFIW 468


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 212 LIFLIYFYSTLFSEV 168
           LIF+I FYS L S +
Sbjct: 233 LIFIILFYSRLLSSI 247


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 321 LSFYVRSVKHSINNDDTRSNCY 256
           L  Y RS  H   N + RSN Y
Sbjct: 240 LQKYTRSFAHQSINKEARSNLY 261



 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 161 ASLFCSLKKSAKS 123
           ASLFC L+K  +S
Sbjct: 234 ASLFCGLQKYTRS 246


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 212 LIFLIYFYSTLFSEV 168
           LIF+I FYS L S +
Sbjct: 233 LIFIILFYSRLLSSI 247


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 321 LSFYVRSVKHSINNDDTRSNCY 256
           L  Y RS  H   N + RSN Y
Sbjct: 235 LQKYTRSFAHQSINKEARSNLY 256



 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 161 ASLFCSLKKSAKS 123
           ASLFC L+K  +S
Sbjct: 229 ASLFCGLQKYTRS 241


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 212 LIFLIYFYSTLFSEV 168
           +I +IY+YS + S V
Sbjct: 224 MILIIYYYSQIVSHV 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,421
Number of Sequences: 438
Number of extensions: 2172
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)