Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327D04f
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   2.6  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   3.4  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    25   5.9  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   5.9  

>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 266 FSRMTSKFIFKNIHLLQKKKEKITF 340
           F    S FI +N+HL+ K  E ITF
Sbjct: 328 FGITMSSFILENLHLVVKLIENITF 352


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 364 RRNYLPIYKSYFFFLLLK*MNVFEN 290
           RRN L +Y S+F  L+L    + EN
Sbjct: 266 RRNSLQLYSSWFIILILSDARIKEN 290


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -1

Query: 440 DWIIVQVVCSALXAIRLYGIYQNNNAKKLFTYLQKLFFLSSFEVNE 303
           DW+   V+C+ L    + G  Q   A  +   L+K   L +  + E
Sbjct: 138 DWVDFGVICALLMLNAVVGFVQEYQAGSIVDELKKSLALKAVVIRE 183


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 39  LYITRNKFARNYN*RNGACSRLVFNFGCF*NIRFFVNTMI 158
           +YIT   +A NY  RN     ++   GC   IR F   +I
Sbjct: 380 IYITIKNYAANYKRRNDLWENIIV-LGCGSRIRGFRECLI 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,640,583
Number of Sequences: 5004
Number of extensions: 27394
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)