Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327D04f
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0428 - 3127098-3129254                                           29   2.6  
02_03_0224 - 16577234-16577494,16577798-16577996,16578069-165781...    28   4.5  
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    28   4.5  

>02_01_0428 - 3127098-3129254
          Length = 718

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 452 FTSFDWIIVQVVCSALXAIRLYGIYQNNNAKKLFTYLQKLFFLSSFEVN 306
           F SF   I Q +C+ L  + +  +  NN    +   L KL FLS+F V+
Sbjct: 583 FNSFSGEIPQAICN-LTNLEMLDLSSNNLMGAIPLELNKLHFLSAFNVS 630


>02_03_0224 -
           16577234-16577494,16577798-16577996,16578069-16578139,
           16578442-16578517,16578632-16578762,16578853-16578978,
           16579075-16579248,16579414-16579484,16579752-16579923,
           16581780-16581892,16582705-16582779,16582913-16583009,
           16583448-16583534,16583535-16583589,16583650-16583828
          Length = 628

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 260 QTFSRMTSKFIFKNIHLLQKKKEKITFVNR*IISSRYCSDIFHTILLXVRH 412
           + F+    KF+++ I ++ K KE I         S +C D+   IL+ VRH
Sbjct: 508 ECFNMAIHKFMYEKIEMIHKTKEAI---------SNHCLDLQFWILILVRH 549


>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
            3110157-3111444
          Length = 1821

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 452  FTSFDWIIVQVVCSALXAIRLYGIYQNNNAKKLFTYLQKLFFLSSFEVN 306
            + SF   I Q +C  L  + +  +  NN    +   L KL FLS+F V+
Sbjct: 1689 YNSFSGEIPQAICK-LTDLEMLDLSNNNLTGTIPLQLSKLHFLSAFNVS 1736


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,639,865
Number of Sequences: 37544
Number of extensions: 120110
Number of successful extensions: 203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)