Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327D02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 73 2e-14
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 29 0.32
SPCC550.06c |hsp10||mitochondrial heat shock protein Hsp10|Schiz... 29 0.32
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 27 1.7
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch... 25 5.2
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo... 25 5.2
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ... 25 9.0
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 25 9.0
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 9.0
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 9.0
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 9.0
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 25 9.0
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 73.3 bits (172), Expect = 2e-14
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Frame = +3
Query: 147 YETLVETANFLLSRISE---KPNIGIICGSGMGSYWKEGSLAESIADGV-RIPYEDIPNF 314
Y +E +++ ++ E KP + IICGSG+G+ LA ++ V +PYEDIP+F
Sbjct: 20 YIKALEAREYIIEQVPEELSKPKVAIICGSGLGT------LASGLSAPVYEVPYEDIPHF 73
Query: 315 PISTVEGHHGQLVFGHI--EGVSVVAMQGRFHYYEGYPLWKCCLPVASDETVGSE 473
+S V GH +L F + + V + + GR+H YEGYP+ PV + +G E
Sbjct: 74 HVSHVPGHASKLYFAFLGEKRVPTMILAGRYHSYEGYPIEATTFPVRLMKVMGVE 128
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/48 (31%), Positives = 30/48 (62%)
Frame = +1
Query: 367 KECPSLLCRAVFITTKDIHCGSVVYQWRVMKLLGVKILIATNAAGGLN 510
K P+++ + + + + + R+MK++GV++++ TNAAGGLN
Sbjct: 93 KRVPTMILAGRYHSYEGYPIEATTFPVRLMKVMGVEVMVVTNAAGGLN 140
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 29.5 bits (63), Expect = 0.32
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -3
Query: 384 QRRTLLLCDRKQADHDDPPLCLWESLEYLRMVFLPRLLYFLLVNPLSNTNPSQSR 220
+ + L+ RK+ ++D L LW S + + + + L+NP + T P+ +R
Sbjct: 27 REQALVELSRKREQYEDLALILWHSYGVMTALLQEIISVYPLLNPPTLTGPTSNR 81
>SPCC550.06c |hsp10||mitochondrial heat shock protein
Hsp10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 104
Score = 29.5 bits (63), Expect = 0.32
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 150 ETLVETANFLLSRISEKPNIGIICGSGMGSYWKEGSLAE-SIADGVRI 290
+T + FL + EK + G + G G Y KEG LA+ S+A G R+
Sbjct: 26 DTKTASGIFLPEKSVEKLSEGRVISVGKGGYNKEGKLAQPSVAVGDRV 73
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = -3
Query: 342 HDDPPLCLWESLEYLR-MVFLPRLLYFLLVN-PLS 244
H D +C+ S+ +L +V +PR LYFLL + PL+
Sbjct: 188 HKDAIICMMLSVIWLFCLVAIPRFLYFLLASVPLT 222
>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 9 LIFG*LSVVMAPINANDIVEKNCLVTQKVLPEIGSDCNG 125
+IFG +++ A INAN+ ++ LV ++ P NG
Sbjct: 42 IIFGVYAIIQARINANN--DETPLVYEEPAPPFSGQSNG 78
>SPBC13A2.03 |||phosphatidate
cytidylyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = -1
Query: 419 ISFVVMKTALHSNDGHSFYVTENKLTMMTLHCAYGK----VWNIF---VWYSYPVCYTFC 261
I FV+ +L + + F ++ T MTL G+ + N+F W+ PVCY C
Sbjct: 159 IGFVLFVASLKKGN-YKFQFSQFCWTHMTLLLVVGQSHFMINNLFEGLFWFFVPVCYVVC 217
>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
Orc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 264
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 315 PISTVEGHHGQLVFGHIEGVSVVAMQGRFHY---YEGYPLWKCCL 440
P++ +EG+ Q I+ S +A + Y + YP+WK C+
Sbjct: 204 PLNGIEGYESQKQ--RIKPWSGIASMIQIDYEKRLQNYPIWKACI 246
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 99 PEIGSDCNGNERTGYSYETLVETANFLLSRISEKPNIGIICGSG 230
PE + NE Y Y T + A F++ + PN I +G
Sbjct: 116 PEYETANTNNE--SYIYNTQISAAQFIIDMVKANPNEITIVAAG 157
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Frame = -3
Query: 363 CDRKQADHDDPPL-------CLWESLEYLRMVFLPRLLYFLLVN---PLSNTNPSQSRK 217
C K DH PPL ++ +E+L P+ L ++ V+ P + N +SR+
Sbjct: 43 CTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMAVDGCAPRAKMNQQRSRR 101
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 347 LTMMTLHCAYGKVWNIFVWYSYPVCY 270
L L C + NI +WY+ VCY
Sbjct: 451 LEYFVLICNHEPAQNIGLWYNMGVCY 476
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 282 VRIPYEDIPNFPISTVEGHHGQLVF 356
VR P EDIP F I V H VF
Sbjct: 473 VRFPSEDIPKF-IEYVRNSHDNKVF 496
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 224 LWDGFVLERGFTSRKYSRRGKNTI 295
++DGFVL++G+ + +S N I
Sbjct: 163 IYDGFVLQKGYQVQHFSGNAINDI 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,387
Number of Sequences: 5004
Number of extensions: 51902
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -