Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327D02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0506 + 4017568-4017716,4018171-4018474                           31   0.56 
03_01_0527 + 3960982-3961290,3961371-3961464,3961898-3962084,396...    31   0.56 
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056...    29   1.7  
06_02_0064 + 11062798-11063568,11064212-11064261,11064354-110645...    29   2.3  
01_01_1014 - 8022787-8023935                                           28   4.0  
04_04_0898 + 29220860-29221462,29221547-29222545                       27   6.9  

>12_01_0506 + 4017568-4017716,4018171-4018474
          Length = 150

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 324 TVEGHHGQLVFGHIEGVSVVAMQGRFHYYEGYPLWKCCLPVASDETVGSENFNSDKRCR 500
           T+E   G  V GH+ GV       R +  +G+P  +   P+  D   G    ++DK C+
Sbjct: 8   TMEARRGLGVAGHLGGVGAPWGGWRGYRRQGFPRNRKSDPIGRDLQTGLRALSNDKACK 66


>03_01_0527 +
           3960982-3961290,3961371-3961464,3961898-3962084,
           3962194-3962449,3962561-3962773,3962856-3962942,
           3963089-3963223,3963296-3963409,3963507-3963754,
           3963824-3963904,3963979-3964210,3964340-3964438,
           3964513-3964701,3964928-3965023
          Length = 779

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
 Frame = +3

Query: 81  VTQKVLPEIGSDCNGNERTGYSYETLVETANFLLSRISEKPNIGIICGSGMGSYWK---- 248
           + QK+  E GS  +   + G  +   V        +  E+    I CG   G  W     
Sbjct: 580 IRQKLAAEFGSTPDKQGKLGRQHTANVTVTYLRTEKYYEELASSIFCGVLPGDGWSGRME 639

Query: 249 ----EGSLAESIADGVRIPYEDIPNF 314
               +G +   I DG+ +PYE++ N+
Sbjct: 640 DSMLQGCIPVIIQDGILLPYENMLNY 665


>07_03_1710 -
           28903614-28903673,28904982-28905146,28905453-28905638,
           28905784-28905927,28906281-28906460,28906559-28907215
          Length = 463

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 23  TKCGNGTYKRERYRG-EKLFGHAEGAAGNRI 112
           ++CG   Y R+  RG + LFGHA+G    RI
Sbjct: 139 SRCGGRDYWRQFMRGLDYLFGHADGYGERRI 169


>06_02_0064 +
           11062798-11063568,11064212-11064261,11064354-11064510,
           11064598-11064816,11065301-11065429,11066502-11068031,
           11068654-11069013,11069086-11069205,11069727-11069897,
           11070022-11070180,11070327-11070452,11070660-11070968
          Length = 1366

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 237 SYWKEGSLAESIADGVRIPYEDIPNFPISTVEGHHGQLVF 356
           S W    LA +  DG+   ++D  + P+S ++ H GQ V+
Sbjct: 384 SQWMTTRLASASKDGMVKIWDDRKSVPLSVLKPHDGQAVY 423


>01_01_1014 - 8022787-8023935
          Length = 382

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 298 SYGILTPSAILSASEPSFQYEPIPEPQMMP 209
           SYG+LT   +     P   Y P+P+   +P
Sbjct: 216 SYGLLTCDVVYGDDPPDLHYVPLPQDSELP 245


>04_04_0898 + 29220860-29221462,29221547-29222545
          Length = 533

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 102 EIGSDCNGNERTGYSYETLVETANFLLSRISEK 200
           E+GS CNG   +G   E LV     +L    EK
Sbjct: 267 EVGSGCNGGGNSGGGEEVLVRLLQVVLEGKDEK 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,302,072
Number of Sequences: 37544
Number of extensions: 332538
Number of successful extensions: 935
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)