Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS327D02f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045645-1|AAC02605.1| 301|Caenorhabditis elegans Hypothetical ... 77 1e-14
Z81536-3|CAB63200.1| 333|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF098994-3|AAT81188.1| 455|Caenorhabditis elegans Hypothetical ... 29 2.7
AF098994-2|AAT81187.1| 505|Caenorhabditis elegans Hypothetical ... 29 2.7
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z82076-5|CAB04935.2| 307|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z22181-11|CAE18061.1| 206|Caenorhabditis elegans Hypothetical p... 27 6.2
L16621-14|AAA28224.3| 612|Caenorhabditis elegans Glycosylation ... 27 6.2
AF031833-1|AAC13669.1| 612|Caenorhabditis elegans GLY3 protein. 27 6.2
>AF045645-1|AAC02605.1| 301|Caenorhabditis elegans Hypothetical
protein K02D7.1 protein.
Length = 301
Score = 76.6 bits (180), Expect = 1e-14
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Frame = +3
Query: 144 SYETLVETANFLLSRISE---KPNIGIICGSGMGSYWKEGSLAESIADGVRIPYEDIPNF 314
+Y+ ++ A + ++ E + ++GIICGSG+G + +++ D +PY IP F
Sbjct: 21 NYDDVLSVAASIREQVGEDVARADLGIICGSGLGP------IGDTVQDATILPYSKIPGF 74
Query: 315 PISTVEGHHGQLVFGHIEGVSVVAMQGRFHYYE-GYPLWKCCLPV 446
P + V GH G ++FG + G VV +QGRFH YE L C LPV
Sbjct: 75 PTTHVVGHKGNMIFGKLGGKKVVCLQGRFHPYEHNMDLALCTLPV 119
Score = 33.9 bits (74), Expect = 0.071
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +1
Query: 448 RVMKLLGVKILIATNAAGGLN 510
RVM LG+KI+I +NAAGG+N
Sbjct: 120 RVMHQLGIKIMIVSNAAGGIN 140
>Z81536-3|CAB63200.1| 333|Caenorhabditis elegans Hypothetical
protein F40D4.3 protein.
Length = 333
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 121 LQSDPISGSTFCVTKQFFSTISFAFIGAITTLSYP 17
L+S PIS ST + +QFF +S I I +++P
Sbjct: 223 LKSTPISRSTIRLQQQFFIAMSMQVILPIVIIAFP 257
>AF098994-3|AAT81188.1| 455|Caenorhabditis elegans Hypothetical
protein T06A4.3b protein.
Length = 455
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 37 WHL*TRTISWRKIVWSRRRCCRKSDL 114
W + RK +W R RCCR DL
Sbjct: 245 WRKNRSKMQCRKDIWGRNRCCRGVDL 270
>AF098994-2|AAT81187.1| 505|Caenorhabditis elegans Hypothetical
protein T06A4.3a protein.
Length = 505
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 37 WHL*TRTISWRKIVWSRRRCCRKSDL 114
W + RK +W R RCCR DL
Sbjct: 245 WRKNRSKMQCRKDIWGRNRCCRGVDL 270
>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
protein C04A11.3 protein.
Length = 1228
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -1
Query: 374 HSFYVTENKLTMMTLHCAYGKVWNIFV 294
+S Y ENKLTM+ C G V NI V
Sbjct: 97 YSTYFFENKLTMLLEFCGGGAVDNIIV 123
>Z82076-5|CAB04935.2| 307|Caenorhabditis elegans Hypothetical
protein W07G1.3 protein.
Length = 307
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -2
Query: 256 EPSFQYEPIPEPQMMPMFGFSDILDSKKFAVSTNVS*EYPVLSFPLQSDPISGST 92
+PS Y P+P PQ P F S ++ ++ +Y ++ P+ PI T
Sbjct: 100 QPSNYYTPLPLPQQPPTFDPSTLMPQQQMMFHPG---QYHMVMSPIAPHPIPVDT 151
>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical
protein F59F3.1 protein.
Length = 1227
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -2
Query: 199 FSDILDSKKFAVSTNVS*EYPVLS 128
FS+ LD K FAVSTN+S Y VLS
Sbjct: 411 FSENLDIKAFAVSTNMSGTY-VLS 433
>Z22181-11|CAE18061.1| 206|Caenorhabditis elegans Hypothetical
protein ZK632.14 protein.
Length = 206
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 154 VS*EYPVLSFPLQSDPISGSTFCVTKQFFSTISFAFIGAITT 29
V+ E PV+ + DP G C++ Q S AF+ I T
Sbjct: 113 VTVEVPVIFIVISRDPFPGEYSCMSMQCSSDKDIAFLPVIRT 154
>L16621-14|AAA28224.3| 612|Caenorhabditis elegans Glycosylation
related protein 3 protein.
Length = 612
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 130 SFPLQSDPISGSTFCVTKQFFSTI 59
S P+Q+ I+G F + KQFF I
Sbjct: 337 SMPIQTPTIAGGLFAIDKQFFYDI 360
>AF031833-1|AAC13669.1| 612|Caenorhabditis elegans GLY3 protein.
Length = 612
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 130 SFPLQSDPISGSTFCVTKQFFSTI 59
S P+Q+ I+G F + KQFF I
Sbjct: 337 SMPIQTPTIAGGLFAIDKQFFYDI 360
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,022,455
Number of Sequences: 27780
Number of extensions: 287215
Number of successful extensions: 895
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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