Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    26   3.0  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   3.9  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    25   5.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   6.8  

>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 236 KINYVDLIPSIIRAGKKTII*NFRMLPKKTDNVTKHI 346
           K  Y  + PS+ R GKKTI  N   + K+      H+
Sbjct: 192 KRKYTIVPPSVHREGKKTIFANISDISKRMHRSLDHV 228


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 227 SILKINYVDLIPSIIRAGKKTI 292
           +++K  YVD IP  I+ G KT+
Sbjct: 166 ALIKPQYVDHIPRAIKTGDKTV 187


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 271 PRWKKDNYLKLPNVTQKNG*RHKAYSTQL*SKNLNSFKLTINTHIN 408
           P+ KKD  LK  NVT+    + K +S ++  ++++ F LT N H N
Sbjct: 75  PKTKKDVVLKNSNVTECVALKAKPFSKKI--EDMDIFLLT-NVHEN 117


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +1

Query: 256  DSFNNPRWKKDNYLKLPNVTQKNG*RHKAYSTQL*SKNLNSFKLTI 393
            + F N +   + YL++  +++KNG   +A++  L + +L+    TI
Sbjct: 1650 EKFENTKKTAEIYLEIARISRKNGQFQRAFNAILKAMDLDKPLATI 1695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,989
Number of Sequences: 5004
Number of extensions: 36278
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)