Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327C11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z72505-7|CAA96614.1|  333|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z70780-16|CAA94829.1|  333|Caenorhabditis elegans Hypothetical p...    27   6.2  

>AF045642-7|AAC02583.1|  592|Caenorhabditis elegans Hypothetical
           protein C17H12.4 protein.
          Length = 592

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 487 VVFYEHISSYHNYQIISNHIILIFNFIL 404
           V FYE  S YH Y  ++  I+LIF   L
Sbjct: 529 VRFYEESSKYHQYSYMTISILLIFTIFL 556


>AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical
           protein F52G3.3 protein.
          Length = 807

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 490 YVVFYEHISSYHNYQIISNHIILIFNFILKALF 392
           Y +F+ + S +H    +  H IL F FILK +F
Sbjct: 392 YKIFFPN-SKFHPLLFVFQHSILHFKFILKIIF 423


>Z72505-7|CAA96614.1|  333|Caenorhabditis elegans Hypothetical
           protein C50C10.1 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 493 IYVVFYEHISSYHNYQIISNHIILIFNFILKALFSLINHAKSTLK 359
           IY +FY   S+     II   I++ F  + K   S   H K+ LK
Sbjct: 201 IYTIFYSMFSNASIILIIVTAILMFFKLLQKRKISSELHRKTDLK 245


>Z70780-16|CAA94829.1|  333|Caenorhabditis elegans Hypothetical
           protein C50C10.1 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 493 IYVVFYEHISSYHNYQIISNHIILIFNFILKALFSLINHAKSTLK 359
           IY +FY   S+     II   I++ F  + K   S   H K+ LK
Sbjct: 201 IYTIFYSMFSNASIILIIVTAILMFFKLLQKRKISSELHRKTDLK 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,265,352
Number of Sequences: 27780
Number of extensions: 151370
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)