Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS327C07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    30   0.24 
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    29   0.32 
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   2.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   5.2  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   5.2  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   5.2  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.2  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    25   6.8  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    25   9.0  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = -1

Query: 521 DEXMQKVRKXLMAKQAAQSRVEKVRQLREQKKIAKRVQIDTKLKQAAEKKQMLEQLKRV 345
           ++ +++ ++    +   Q R EK +Q   +KK+ K+ Q   + K A E++   E+ KR+
Sbjct: 643 EQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRI 701


>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 16/52 (30%), Positives = 32/52 (61%)
 Frame = -1

Query: 503 VRKXLMAKQAAQSRVEKVRQLREQKKIAKRVQIDTKLKQAAEKKQMLEQLKR 348
           +++ L A++ A++ VEK RQ R Q+    R++   ++ + A KK+  E+ K+
Sbjct: 9   IQQLLEAEKVARNIVEKARQHRTQRLKDARLEAKREIDEYASKKE--EEFKK 58


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/54 (33%), Positives = 32/54 (59%)
 Frame = -1

Query: 509 QKVRKXLMAKQAAQSRVEKVRQLREQKKIAKRVQIDTKLKQAAEKKQMLEQLKR 348
           QK  + L  ++  Q R E+ ++LREQ+KIA +   + + K   E+ ++ EQ +R
Sbjct: 92  QKEAERLKREKERQQR-EQEKKLREQEKIAAKKMKELE-KLEKERIRLQEQQRR 143


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 168 HIVSRFSCIQFGPFLF 215
           H ++RF C+ F PFLF
Sbjct: 282 HFLARFFCLIFFPFLF 297


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
 Frame = -1

Query: 464 RVEKVRQLREQKKIAKRV----QIDTKLKQAAEKKQMLEQLKRVRKGKA 330
           R  + R+ +EQ K AKR+    + + +LK+  EK +  E+ KR++K +A
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEE-KRLQKERA 755


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/57 (21%), Positives = 32/57 (56%)
 Frame = -1

Query: 518  EXMQKVRKXLMAKQAAQSRVEKVRQLREQKKIAKRVQIDTKLKQAAEKKQMLEQLKR 348
            E  +++ +  + +Q AQS  +++  +R++ ++  ++++    K  A  +  LEQ K+
Sbjct: 1605 EKRREILQKDVEEQVAQSHQKQLDNIRKELEMRNKLKLSMLEKNLARVRAELEQSKK 1661


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -1

Query: 518 EXMQKVRKXL-MAKQAAQSRVEKVRQLREQKKIAKR 414
           E  Q+V K + ++ ++  S++++    +E+KKIAKR
Sbjct: 81  EFSQRVNKAIPVSFKSGPSKIDEFTDKKEKKKIAKR 116


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 434 QKKIAKRVQIDTKLKQAAEKKQMLEQLKRVRKGKASDLD 318
           Q KI K  +I+ K+ Q  ++  + EQLK++++    +LD
Sbjct: 431 QHKINK--EIEQKITQRHKEYLLTEQLKQIKRELGQELD 467


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 458 EKVRQLREQKKIAKRVQIDTKLKQAAEKKQMLEQLKRVRK 339
           EK++  R Q+K  ++V     L++  EK +   + K++ K
Sbjct: 16  EKIQTFRSQRKATEKVDRALLLQRRKEKAKARAEAKKLAK 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,331
Number of Sequences: 5004
Number of extensions: 24798
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)